A State-Specific PCM-DFT method to include dynamic solvent effects in the calculation of ionization energies: Application to DNA bases
CNR Ibb | back to homepage
▲NavBar
Ricerca avanzata▼
Contiene: [X]      Estesa     Autori: [X]  Tipo di lavoro: [X]   Data iniziale: Data finale: [X]      Sede: Affiliazione IBB     
    
[Pulisci modulo]


A State-Specific PCM-DFT method to include dynamic solvent effects in the calculation of ionization energies: Application to DNA bases (110 visite)

Muñoz-Losa A, Markovitsi D, Improta R

Chem Phys Lett (ISSN: 0009-2614), 2015; 634: 20-24.



Tipo di articolo: Journal Article,

Impact factor: 1.86, Impact factor a 5 anni: 1.839

Url: http://www.scopus.com/inward/record.url?eid=2-s2.0-84935891551&partnerID=40&md5=a162a9c5c661afb88be7f0ebbe600097

Parole chiave: Design For Testability, Ionization Potential, Solvents, Computational Results, Consistent Performance, Dft Method, Dna Basis, First Hydration Shell, Functionals, Nucleobases, Solvent Effects,

Affiliazioni:

*** IBB - CNR ***
CNRS, Laboratoire Francis Perrin, URA 2453, Gif-sur-Yvette, France
Istituto Biostrutture e Biommagini-CNR, Via Mezzocannone 16, Napoli, Italy


Riferimenti:

Brown, R., Lennon, J.J., (1995) Anal. Chem., 67, p. 199

Van Berkel, G.J., McLuckey, S.A., Glish, G.L., (1992) Anal. Chem., 64, p. 1586

Roca-Sanjuán, D., Rubio, M., Merchán, M., Serrano-Andrés, L., (2006) J. Chem. Phys., 125

Kamiya, M., Hirata, S., (2006) J. Chem. Phys., 125

Slavíček, P., Winter, B., Faubel, M., Bradforth, S.E., Jungwirth, P., (2009) J. Am. Chem. Soc., 131, p. 6460

Shroeder, C.A., Pluharova, E., Seidel, R., Schroeder, W.P., Faubel, M., Slavíček, P., Winter, B., Bradforth, S.E., (2015) J. Am. Chem. Soc., 137, p. 201

Pluharova, E., Schroeder, C., Seidel, R., Bradforth, S.E., Winter, B., Faubel, M., Slavícek, P., Jungwirth, P., (2013) J. Phys. Chem. Lett., 4, p. 3766

Pluharova, E., Jungwirth, P., Bradforth, S.E., Jungwirth, P., Slavíček, P., (2011) J. Phys. Chem. B, 115, p. 1294

Improta, R., Barone, V., Santoro, F., (2007) Angew. Chem., Int. Ed., 46, p. 405

Ferrer, F.J.A., Improta, R., Santoro, F., Barone, V., (2011) Phys. Chem. Chem. Phys., 13

Ferrer, F.J.A., Cerezo, J., Soto, J., Improta, R., Santoro, F., (2014) Comput. Theory Chem., 1040, p. 328

Middleton, C.T., De La Harpe, K., Su, C., Law, Y.K., Crespo-Hernández, C.E., Kohler, B., (2009) Annu. Rev. Phys. Chem., 60, p. 217

Candeias, L.P., Steenken, S., (1992) J. Am. Chem. Soc., 114, p. 699

Marguet, S., Markovitsi, D., Talbot, F., (2006) J. Phys. Chem. B, 110

Cadet, J., Douki, T., Ravanat, J.-L., (2010) Free Rad. Biol. Med., 49, p. 9

Wagenknecht, H.A., (2005) Charge Transfer in DNA: From Mechanism to Application, , Blackwell Science Publ. Oxford

Genereux, J.C., Barton, J.K., (2010) Chem. Rev., 110, p. 1642

Schuster, G.B., Long-Range Charge Transfer in DNA i (2004) Topics in Current Chemistry, 236. , Springer Berlin

Sevilla, M.D., Besler, B., Colson, A.O., (1995) J. Phys. Chem., 99, p. 1060

Cauet, E., Dehareng, D., Lievin, J., (2006) J. Phys. Chem. A, 110, p. 9200

Cauet, E., Lievin, J., (2007) Adv. Quantum Chem., 52, p. 121

Close, D.M., Ohman, K.T., (2008) J. Phys. Chem. A, 112

Rubio, M., Roca-Sanjuán, D., Serrano-Andrés, L., Merchán, M., (2009) J. Phys. Chem. B, 113, p. 2451

Bravaya, K.B., Kostko, O., Dolgikh, S., Landau, A., Ahmed, M., Krylov, A., (2010) J. Phys. Chem. A, 114

Improta, R., Scalmani, G., Barone, V., (2000) Int. J. Mass Spectrom., 201, p. 321

Khistyaev, K., Bravaya, K.B., Kamarchik, E., Kostko, O., Ahmed, M., Krylov, A.I., (2011) Faraday Discuss., 150, p. 313

Close, D.M., Crespo-Hernández, C.E., Gorb, L., Leszczynski, J., (2008) J. Phys. Chem. A, 112

Roca-Sanjuán, D., Olaso-González, G., Rubio, M., Coto, P.B., Merchán, M., Ferré, N., Ludwig, V., Serrano-Andrés, L., (2009) Pure Appl. Chem., 81, p. 743

Cauet, E., Valiev, M., Weare, J.H., (2010) J. Phys. Chem. B, 114, p. 5886

Tomasi, J., Mennucci, B., Cammi, R., (2005) Chem. Rev., 105, p. 2999

Frisch, M.J., Trucks, G.W., Schlegel, H.B., (2009) Gaussian 09, Revision D.01, , Gaussian, Inc. Wallingford, CT

Becke, A.D., (1993) J. Chem. Phys., 98, p. 5648

Adamo, C., Barone, V., (1999) J. Chem. Phys., 110, p. 6158

Yanai, T., Tew, D., Handy, N., (2004) Chem. Phys. Lett., 393, p. 51

Zhan, Y., Schultz, N.E., Truhlar, D.G., (2006) J. Chem. Theory Comput., 2, p. 364

Dougherty, D., Younathan, E.S., Voll, R., Abdulnur, S., McGlynn, S.P., (1978) J. Electron Spectrosc. Relat. Phenom., 13, p. 379

Fernando, H., Papadantonakis, G.A., Kim, N.S., Lebreton, P.R., (1998) Proc. Natl. Acad. Sci. U. S. A., 95, p. 5550

Yu, C., Odonnell, T.J., Lebreton, P.R., (1981) J. Phys. Chem., 85, p. 3851

Lin, J., Yu, C., Peng, S., Akiyama, I.K., Li Kao Lee, L.I., Lebreton, P.R., (1980) J. Phys. Chem., 84, p. 1006

Schlegel, H.B., (1986) J. Chem. Phys., 84, p. 4530

Esposito, L., Banyasz, A., Douki, T., Perron, M., Markovitsi, D., Improta, R., (2014) J. Am. Chem. Soc., 136



A State-Specific PCM-DFT method taking into account dynamical solvent effects in the calculation of ionization energies (IEs) is reported. Mono-methylated nucleobases, representative of DNA blocks, are used as a test case. The accuracy of several functionals is tested, the M05-2X functional providing the most consistent performance. The inclusion of some molecules of the first hydration shell does not significantly affect the computed IE. The obtained vertical and adiabatic IEs are in good agreement with the available experimental and computational results, supporting the reliability of our method, enabling the calculation of first and upper ionization energies by using a single approach. © 2015 EW MATERIALS. All rights reserved.
Nessun risultato.
Nessun risultato.

Ricerca avanzata▼
Contiene: [X]      Estesa     Autori: [X]  Tipo di lavoro: [X]   Data iniziale: Data finale: [X]      Sede: Affiliazione IBB     
    
[Pulisci modulo]
Vai a fine pagina   Versione per copia e incolla facile   Esporta tutto in BibTeX   Esporta tutto in EndNote


Martinez-fernandez L, Pepino AJ, Segarra-marti J, Jovaisaite J, Vaya I, Nenov A, Markovitsi D, Gustavsson T, Banyasz A, Garavelli M, Improta R
* Photophysics of Deoxycytidine and 5-Methyldeoxycytidine in Solution: A Comprehensive Picture by Quantum Mechanical Calculations and Femtosecond Fluorescence Spectroscopy (78 visite)
J Am Chem Soc (ISSN: 0002-7863, 0002-2786, 0002-7863print), 2017 Jun 14; 139(23): 7780-7791.
Impact Factor: 14.357
Dettagli    Esporta in BibTeX    Esporta in EndNote

Martínez-fernández L, Granucci G, Pollum M, Crespo-hernández CE, Persico M, Corral I
* Decoding the Molecular Basis for the Population Mechanism of the Triplet Phototoxic Precursors in UVA Light-Activated Pyrimidine Anticancer Drugs (13 visite)
Chemistry (ISSN: 0947-6539, 1521-3765, 1521-3765electronic), 2017; 23(11): 2619-2627.
Impact Factor: 5.16
Dettagli    Esporta in BibTeX    Esporta in EndNote

Martinez-fernandez L, Pepino AJ, Segarra-marti J, Banyasz A, Garavelli M, Improta R
* Computing the Absorption and Emission Spectra of 5-Methylcytidine in Different Solvents: A Test-Case for Different Solvation Models (73 visite)
J Chem Theory Comput (ISSN: 1549-9618, 1549-9626electronic), 2016 Sep 13; 12(9): 4430-4439.
Impact Factor: 5.245
Dettagli    Esporta in BibTeX    Esporta in EndNote

Petrone A, Cerezo J, Ferrer FJA, Donati G, Improta R, Rega N, Santoro F
* Absorption and emission spectral shapes of a prototype dye in water by combining classical/dynamical and quantum/static approaches (156 visite)
J Phys Chem A (ISSN: 1089-5639, 1520-5215electronic), 2015; 119(21): 5426-5438.
Impact Factor: 2.883
Dettagli    Esporta in BibTeX    Esporta in EndNote

Fahleson T, Kauczor J, Norman P, Santoro F, Improta R, Coriani S
* TD-DFT investigation of the magnetic circular dichroism spectra of some purine and pyrimidine bases of nucleic acids (159 visite)
J Phys Chem A (ISSN: 1089-5639, 1520-5215electronic), 2015; 119(21): 5476-5489.
Impact Factor: 2.883
Dettagli    Esporta in BibTeX    Esporta in EndNote

Improta R
* Quantum mechanical calculations unveil the structure and properties of the absorbing and emitting excited electronic states of guanine quadruplex (130 visite)
Chemistry (ISSN: 0947-6539, 1521-3765, 1521-3765electronic), 2014 Jun 23; 20(26): 8106-8115.
Impact Factor: 5.731
Dettagli    Esporta in BibTeX    Esporta in EndNote

Improta R
* UV-Visible Absorption and Emission Energies in Condensed Phase by PCM/TD-DFT Methods (97 visite)
Comput Strateg For Spectrosc (ISSN: 9780-4704), 2011; N/D: 37-75.
Impact Factor: 0
Dettagli    Esporta in BibTeX    Esporta in EndNote

Abbate M, Casella G, Fiore T, Grasso G, Pellerito C, Scopelliti M, Spinella A, Pellerito L
* Structural characterization of triorganotin(IV) complexes with sodium fusidate and DFT calculations (135 visite)
J Organomet Chem (ISSN: 0022-328x), 2010 May 1; 695(9): 1405-1413.
Impact Factor: 2.205
Dettagli    Esporta in BibTeX    Esporta in EndNote

Mazzaglia A, Micali N, Scolaro LM, Attanasio F, Magrí A, Pappalardo G, Villari V
* Aggregation properties of the peptide fragments derived from the 17-29 region of the human and rat IAPP: A comparative study with two PEG-conjugated variants of the human sequence (229 visite)
J Phys Chem B (ISSN: 1520-6106, 1520-5207, 1520-5207electronic), 2010 Jan 21; 114(2): 705-713.
Impact Factor: 3.603
Dettagli    Esporta in BibTeX    Esporta in EndNote

Improta R, Barone V, Lami A, Santoro F
* Quantum dynamics of the ultrafast ππ*/nπ* population transfer in uracil and 5-fluoro-uracil in water and acetonitrile (135 visite)
J Phys Chem B (ISSN: 1520-6106, 1520-5207, 1520-5207electronic), 2009 Oct 29; 113(43): 14491-14503.
Impact Factor: 3.471
Dettagli    Esporta in BibTeX    Esporta in EndNote

Arnesano F, Scintilla S, Calò V, Bonfrate E, Ingrosso C, Losacco M, Pellegrino T, Rizzarelli E, Natile G
* Copper-triggered aggregation of ubiquitin (214 visite)
Plosone (ISSN: 1932-6203, 1932-6203electronic), 2009 Sep 16; 4(9): e7052-e7052.
Impact Factor: 4.351
Dettagli    Esporta in BibTeX    Esporta in EndNote

Karunakaran V, Kleinermanns K, Improta R, Kovalenko SA
* Photoinduced dynamics of guanosine monophosphate in water from broad-band transient absorption spectroscopy and quantum-chemical calculations (131 visite)
J Am Chem Soc (ISSN: 0002-7863, 0002-2786, 1520-5126), 2009; 131(16): 5839-5850.
Impact Factor: 8.58
Dettagli    Esporta in BibTeX    Esporta in EndNote

Improta R, Scalmani G, Frisch MJ, Barone V
* Toward effective and reliable fluorescence energies in solution by a new state specific polarizable continuum model time dependent density functional theory approach (138 visite)
J Chem Phys (ISSN: 0021-9606, 0897-690online), 2007 Sep 21; 127(7): N/D-N/D.
Impact Factor: 3.044
Dettagli    Esporta in BibTeX    Esporta in EndNote

Improta R, Barone V, Santoro F
* Ab initio calculations of absorption spectra of large molecules in solution: Coumarin C153 (135 visite)
Angew Chem Int Ed (ISSN: 1433-7851, 1521-3773electronic), 2007; 46(3): 405-408.
Impact Factor: 10.031
Dettagli    Esporta in BibTeX    Esporta in EndNote

Santoro F, Barone V, Gustavsson T, Improta R
* Solvent effect on the singlet excited-state lifetimes of nucleic acid bases: A computational study of 5-fluorouracil and uracil in acetonitrile and water (100 visite)
J Am Chem Soc (ISSN: 0002-7863, 0002-2786, 1520-5126), 2006 Dec 20; 128(50): 16312-16322.
Impact Factor: 7.696
Dettagli    Esporta in BibTeX    Esporta in EndNote

Improta R, Barone V, Scalmani G, Frisch MJ
* A state-specific polarizable continuum model time dependent density functional theory method for excited state calculations in solution (123 visite)
J Chem Phys (ISSN: 0021-9606, 0897-690online), 2006 Sep 7; 125(5): N/D-N/D.
Impact Factor: 3.166
Dettagli    Esporta in BibTeX    Esporta in EndNote

Gustavsson T, Sarkar N, Lazzarotto E, Markovitsi D, Barone V, Improta R
* Solvent effect on the singlet excited-state dynamics of 5-fluorouracil in acetonitrile as compared with water (138 visite)
J Phys Chem B (ISSN: 1520-6106, 1520-5207, 1520-5207electronic), 2006 Jul 6; 110(26): 12843-12847.
Impact Factor: 4.115
Dettagli    Esporta in BibTeX    Esporta in EndNote

Barone V, Newton MD, Improta R
* Dissociative electron transfer in donor - Peptide - Acceptor systems: Results for kinetic parameters from a density functional/polarizable continuum model (111 visite)
J Phys Chem B (ISSN: 1520-6106, 1520-5207, 1520-5207electronic), 2006 Jun 29; 110(25): 12632-12639.
Impact Factor: 4.115
Dettagli    Esporta in BibTeX    Esporta in EndNote

Improta R, Barone V, Scalmani G, Frisch MJ
* A State-Specific Pcm Td-Dft Method For Equilibrium And Non-Equilibrium Excited State Calculations In Solution (135 visite)
J Chem Phys (ISSN: 0897-690online, 0021-9606printed), 2006; 125(5): 54103-54103.
Impact Factor: 3.093
Dettagli    Esporta in BibTeX    Esporta in EndNote

Saviano M, Isernia C, Bassarello C, Di Lello P, Galdiero S, Mierke DF, Benedetti E, Pedone C
* Conformational analysis by NMR and distance geometry techniques of a peptide mimetic of the third helix of the Antennapedia homeodomain (170 visite)
J Pept Res (ISSN: 1397-002x), 2005 Feb; 65(2): 200-208.
Impact Factor: 1.741
Dettagli    Esporta in BibTeX    Esporta in EndNote

Improta R, Antonello S, Formaggio F, Maran F, Rega N, Barone V
* Understanding Electron Transfer across Negatively-Charged Aib Oligopeptides (246 visite)
J Phys Chem B (ISSN: 1520-6106, 1520-5207, 1520-5207electronic), 2005 Jan 20; 109(2): 1023-1033.
Impact Factor: 4.033
Dettagli    Esporta in BibTeX    Esporta in EndNote

Vergara A
* Distinct diffusion in macromolecule-solvent mixtures (119 visite)
Macromol Theory Simul (ISSN: 1022-1344), 2005; 14(1): 21-25.
Impact Factor: 1.544
Dettagli    Esporta in BibTeX    Esporta in EndNote

Farrera-Sinfreu J, Zaccaro L, Vidal D, Salvatella X, Giralt E, Pons M, Albericio F, Royo M
* A New Class of Foldamers Based on cis-γ-Amino-L-proline (184 visite)
J Am Chem Soc (ISSN: 0002-7863, 0002-2786, 1520-5126), 2004 May 19; 126(19): 6048-6057.
Impact Factor: 6.903
Dettagli    Esporta in BibTeX    Esporta in EndNote

Cimino P, Improta R, Bifulco G, Riccio R, Gomez-paloma L, Barone V
* Nucleophilic Cyclopropane Ring Opening in Duocarmycin SA Derivatives by Methanol under Acid Conditions: A Quantum Mechanical Study in the Gas-Phase and in Solution (150 visite)
J Org Chem (ISSN: 0022-3263), 2004; 69(8): 2816-2824.
Impact Factor: 3.462
Dettagli    Esporta in BibTeX    Esporta in EndNote

De Luca S, Ragone R, Bracco C, Digilio G, Tesauro D, Saviano M, Pedone C, Morelli G
* The role of segment 32-47 of cholecystokinin receptor type A in CCK8 binding: Synthesis, nuclear magnetic resonance, circular dichroism and fluorescence studies (119 visite)
J Pept Sci (ISSN: 1075-2617, 1099-1387, 1075-2617print), 2003 Mar; 9(3): 156-169.
Impact Factor: 1.377
Dettagli    Esporta in BibTeX    Esporta in EndNote

D'Amore M, Improta R, Barone V
* Conformational behavior and magnetic properties of a nitroxide amino acid derivative in vacuo and in aqueous solution (109 visite)
J Phys Chem A (ISSN: 1089-5639, 1520-5215electronic), 2003; 107(32): 6264-6269.
Impact Factor: 2.792
Dettagli    Esporta in BibTeX    Esporta in EndNote

Merlino A, Vitagliano L, Ceruso M, Di Nola A, Mazzarella L
* Global and local motions in ribonuclease A: A molecular dynamics study (173 visite)
Biopolymers (ISSN: 0006-3525, 0006-6352, 0006-3525print), 2002 Nov 15; 65(4): 274-283.
Impact Factor: 2.372
Dettagli    Esporta in BibTeX    Esporta in EndNote

Langella E, Improta R, Barone V
* Conformational and spectroscopic analysis of the tyrosyl radical dipeptide analogue in the gas phase and in aqueous solution by a density functional/continuum solvent model (146 visite)
J Am Chem Soc (ISSN: 0002-7863, 0002-2786, 1520-5126), 2002 Sep 25; 124(38): 11531-11540.
Impact Factor: 6.201
Dettagli    Esporta in BibTeX    Esporta in EndNote

Saviano G, Rossi F, Benedetti E, Pedone C, Mierke DF, Maione A, Zanotti G, Tancredi T, Saviano M
* Structural consequences of metal complexation of cyclo[Pro-Phe-Phe-Ala-Xaa]2 decapeptides (168 visite)
Chemistry (ISSN: 0947-6539, 1521-3765, 1521-3765electronic), 2001 Mar 16; 7(6): 1176-1183.
Impact Factor: 4.614
Dettagli    Esporta in BibTeX    Esporta in EndNote

De Simone G, Lombardi A, Galdiero S, Nastri F, Della Morte R, Staiano N, Pedone C, Bolognesi M, Pavone V
Hirunorms Are True Hirudin Mimetics. The Crystal Structure Of Human Alpha-Thrombin-Hirunorm V Complex (156 visite)
Protein Sci (ISSN: 0961-8368, 1469-896xelectronic), 1998 Feb; 7(2): 243-253.
Impact Factor: 4.44
Dettagli    Esporta in BibTeX    Esporta in EndNote

Zanotti G, Maione A, Rossi F, Saviano M, Pedone C, Tancredi T
BIOACTIVE PEPTIDES - CONFORMATIONAL STUDY OF A CYSTINYL CYCLOHEPTAPEPTIDE IN ITS FREE AND CALCIUM COMPLEXED FORMS (185 visite)
Biopolymers (ISSN: 0006-3525, 0006-6352, 0006-3525print), 1993 Jul; 33(7): 1083-1091.
Impact Factor: 2.425
Dettagli    Esporta in BibTeX    Esporta in EndNote

Di Blasio B, Lombardi A, D'Auria G, Saviano M, Isernia C, Maglio O, Paolillo L, Pedone C, Pavone V
Beta-Alanine Containing Peptides: Gamma-Turns In Cyclotetrapeptides (186 visite)
Biopolymers (ISSN: 0006-3525, 0006-6352, 0006-3525print), 1993 Apr; 31(10): 621-631.
Impact Factor: 2.425
Dettagli    Esporta in BibTeX    Esporta in EndNote



32 Records (29 escludendo Abstract e Conferenze).
Impact factor totale: 138.058 (127.497 escludendo Abstract e Conferenze).
Impact factor a 5 anni totale: 151.792 (141.224 escludendo Abstract e Conferenze).







    Esporta in BibTeX    Esporta in EndNote