A novel type of zinc finger DNA binding domain in the Agrobacterium tumefaciens transcriptional regulator Ros(369 views visite) Esposito S, Baglivo I, Malgieri G, Russo L, Zaccaro L, D'Andrea LD, Mammucari M, Di Blasio B, Isernia C, Fattorusso R, Pedone PV
Keywords Parole chiave: Amino Acids, Bacteria, Biochemistry, Characterization, Proteins, Agrobacterium Tumefaciens, Functional Characterization, Zinc Binding Motif, Cysteine, Dna Binding Protein, Histidine, Nitrogen 15, Ros Protein, Transcription Factor, Unclassified Drug, Zinc Finger Protein, Amino Acid Sequence, Article, Atomic Emission Spectrometry, Gel Mobility Shift Assay, Genetic Transcription, Matrix Assisted Laser Desorption Ionization Time Of Flight Mass Spectrometry, Molecular Cloning, Nitrogen Nuclear Magnetic Resonance, Nonhuman, Nucleotide Sequence, Polymerase Chain Reaction, Priority Journal, Protein Domain, Proton Nuclear Magnetic Resonance, Rhizobium Radiobacter, Transcription Regulation, Animals, Bacterial Proteins, Dna-Binding Proteins, Molecular Sequence Data, Plants, Protein Binding, Protein Structure, Tertiary, Repressor Proteins, Sequence Alignment, Bacteria (microorganisms), Eukaryota, Prokaryota,
Affiliations Affiliazioni: *** IBB - CNR ***
Dipartimento di Scienze Ambientali, Seconda Università degli Studi di Napoli, Via Vivaldi 43, Caserta, 81100, Italy Istituto di Biostrutture e Bioimmagini, CNR, via Mezzocannone, 16, 80134 Napoli, Italy
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Englbrecht, C. C., Schoof, H., Bohm, S., Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome (2004) BMC Genomics, 5, p. 39
Pedone, P. V., Ghirlando, R., Clore, G. M., Gronenborn, A. M., Felsenfeld, G., Omichinski, J. G., The single Cys2-His2 zinc finger domain of the GAGA protein flanked by basic residues is sufficient for high affinity specific DNA binding (1996) Proc. Natl. Acad. Sci. U. S. A., 93, pp. 2822-2826
Chou, A. Y., Archdeacon, J., Kado, C. I., Agrobacterium transcriptional regulator Ros is prokaryotic zinc finger protein that regulates the plant oncogene ipt (1998) Proc. Natl. Acad. Sci. U. S. A., 95, pp. 5293-5298
Kado, C. I., Negative transcriptional regulation of virulence and oncogenes of the Ti plasmid by bearing a consrved C2H2-zinc finger motif (2002) Plasmid, 48, pp. 179-185
Bittinger, M. A., Milner, J. L., Saville, B. J., Handelsman, J., rosR, a determinant of nodulation competitivness in Rhizobium etli (1997) Mol. Plant-Microbe Interact., 10, pp. 80-186
Bertram-Dogratz, P. A., Quester, I., Becker, A., Puhler, A., The Sinorhizobium meliloti MucR protein, which is essential for the production of high-molecular-weight succinoglycan exopolysaccharide, binds to short DANN regions upstream of exoH and exoY (1998) Mol. Gen. Genet., 257, pp. 433-441
Romine, M. F., Stillwell, L. C., Wong, K. K., Thurston, S. J., Sisk, E. C., Sensen, C., Gaasterland, T., Saffer, J. D., Complete sequence of a 184 kilobase catabolic plasmid from Sphingomonas aromaticivorans F199 (1999) J. Bacteriol., 181, pp. 1585-1602
D'Souza-Ault, M. R., Cooley, M. B., Kado, C. I., Analysis of the Ros repressor of Agrobacterium virC and virD operons: Molecular intercommunication between plasmid and chromosomal genes (1993) J. Bacteriol., 175, pp. 3486-3490
White, B. A., (1993) Methods in Molecular Biology, 15. , Humana Press, Totowa, NJ
Boyer, P. D., Spectrophotometric study of the reaction of protein sulfhydryl groups with organic mercurials (1954) J. Am. Chem. Soc., 76, pp. 4331-4337
Tang, W., Wang, C. C., Zinc finger and thiol-disulfide oxidoreductase activities of chaperone DnaJ (2001) Biochemistry, 40, pp. 14985-14994
Simpson, R. J. Y., Cram, E. D., Czolij, R., Matthews, J. M., Crossley, M., Mackay, J. P., CCHX zinc finger derivatives retain the ability to bind Zn (II) and mediate protein-DNA interaction (2003) J. Biol. Chem., 278, pp. 28011-28018
Omichinski, J. G., Clore, G. M., Schaad, O., Felsenfeld, G., Trainor, C., Appella, E., Stahl, S. J., Gronenborn, A. M., NMR structure of a specific DNA complex of Zn-containing DNA binding domain of GATA-1 (1993) Science, 261, pp. 438-446
Pedone, P. V., Omichinski, J. G., Nony, P., Trainor, C., Gronenborn, A. M., Clore, G. M., Felsenfeld, G., The N-terminal fingers of chicken GATA-2 and GATA-3 are independent sequence-specific DNA binding domains (1997) EMBO J., 16, pp. 2874-2882
A novel type of zinc finger DNA binding domain in the Agrobacterium tumefaciens transcriptional regulator Ros
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