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Software development of digital MRI brain phantomContact person: Marco Comerci, marco.comerci ibb.cnr.itDescription ▼| This activity comprises the development and tuning of a software tool that can produce digital MRI brain phantoms, which simulate relaxation rate distributions of real target studies. Digital brain phantoms are needed to assess the performance of segmentation methods, providing a gold standard, against which compare the segmentation produced by the softwares. The phantom is composed of 17 tissue compartment and an optional abnormal white matter compartment, simulating MS lesions. The software has four head models, two normal volunteers and two MS models. Currently the software allow to manually specify the mean signal intensities of the compartments, orientation, position, noise and other parameters or derive them from a target study, segmented automatically by our segmentation software, optionally warping the phantom to the target study. Four sample phantoms, one for each model, and the custom phantoms are available for download at this link. | Actors ▼Keywords ▼Research Areas ▼Figures ▼ 
Physical model: R1 and compartments | Selected Papers ▼QMCI:Alfano B, Brunetti A, Arpaia M, Ciarmiello A, Covelli EM, Salvatore M, J Magn Reson Imaging, 1995 Mar-Apr;5 (2):217-225Alfano B, Brunetti A, Ciarmiello A, Salvatore M, J Comput Assist Tomogr, 1992 Jul-Aug;16 (4):634-640
Segmentation: Alfano B, Brunetti A, Larobina M, Quarantelli M, Tedeschi E, Ciarmiello A, Covelli EM, Salvatore M, J Magn Reson Imaging, 2000 Dec;12 (6):799-807 Alfano B, Quarantelli M, Brunetti A, Larobina M, Covelli EM, Tedeschi E, Salvatore M, Magn Reson Med, 1998 Mar;39 (3):497-499 Alfano B, Brunetti A, Covelli EM, Quarantelli M, Panico M, Ciarmiello A, Salvatore M, Magn Reson Med, 1997 Jan;37 (1):84-93
Phantom: Alfano B, Comerci M, Larobina M, Prinster A, Hornak JP, Selvan SE, Amato U, Quarantelli M, Tedeschi G, Brunetti A, Salvatore M, Med Image Anal, 2011 Jun;15 (3):329-339 | Related Activities ▼Related Papers ▼Related bibliography▼[Search related bibliography on PubMed] <=2001 2002 2003 2004 2005 2006 2007 2008 2009 2010 2011 2012 2013 2014 2015 2016 2017 ALL YEARS
Sort by: date ▼▲ title ▲ ▼ journal ▲ ▼ authors ▲ ▼ impact factor ▲ ▼* Grey: white matter ratio at diagnosis and the risk of 10-year multiple sclerosis progression (19 views)Moccia M, Quarantelli M, Lanzillo R, Cocozza S, Carotenuto A, Carotenuto B, Alfano B, Prinster A, Triassi M, Nardone A, Palladino R, Brunetti A, Brescia Morra V Eur J Neurol (ISSN: 1468-1331electronic, 1351-5101linking), 2017 Jan; 24(1): 195-204.
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* Diffusion volume (DV) measurement in endometrial and cervical cancer: A new MRI parameter in the evaluation of the tumor grading and the risk classification (377 views) (PDF 66 views)Mainenti PP, Pizzuti LM, Segreto S, Comerci M, Fronzo SD, Romano F, Crisci V, Smaldone M, Laccetti E, Storto G, Alfano B, Maurea S, Salvatore M, Pace L Eur J Radiol (ISSN: 0720-048x, 1872-7727electronic), 2016 Jan; 85(1): 113-124.
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* Cerebral Involvement in Stargardt's Disease: A VBM and TBSS Study (58 views)Gaia O, Melillo P, Sirio C, D'Alterio FM, Prinster A, Testa F, Brunetti A, Simonelli F, Quarantelli M Invest Ophthalmol Vis Sci (ISSN: 1552-5783electronic, 0146-0404linking), 2015 Nov; 56(12): 7388-7397.
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* Clinical And Magnetic Resonance Imaging Predictors Of Disease Progression In Multiple Sclerosis: A Nine-Year Follow-Up Study (96 views) (PDF 68 views)Lavorgna L, Bonavita S, Ippolito D, Lanzillo R, Salemi G, Patti F, Valentino P, Coniglio G, Buccafusca M, Paolicelli D, D'Ambrosio A, Bresciamorra V, Savettieri G, Zappia M, Alfano B, Gallo A, Simone I, Tedeschi G Mult Scler (ISSN: 1352-4585, 1352-2458, 1477-0970), 2014 Feb; 20(2): 220-226.
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* Semiautomatic regional segmentation to measure orbital fat volumes in thyroid-associated ophthalmopathy. A validation study (99 views) (PDF 84 views)Comerci M, Elefante A, Strianese D, Senese R, Bonavolonta P, Alfano B, Bonavolonta B, Brunetti A Neuroradiol J (ISSN: 1971-4009, 1971-4009print, 1971-4009linking), 2013 Aug; 26(4): 373-379.
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* An MRI digital brain phantom for validation of segmentation methods (98 views) (PDF 253 views)Alfano B, Comerci M, Larobina M, Prinster A, Hornak JP, Selvan SE, Amato U, Quarantelli M, Tedeschi G, Brunetti A, Salvatore M Med Image Anal (ISSN: 1361-8415, 1361-8423, 1361-8415linking), 2011 Jun; 15(3): 329-339.
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* Correlation between fatigue and brain atrophy and lesion load in multiple sclerosis patients independent of disability (88 views) (PDF 60 views)Tedeschi G, Dinacci D, Lavorgna L, Prinster A, Savettieri G, Quattrone A, Livrea P, Messina C, Reggio A, Servillo G, Bresciamorra V, Orefice G, Paciello M, Brunetti A, Paolillo A, Coniglio G, Bonavita S, Di Costanzo A, Bellacosa A, Valentino P, Quarantelli M, Patti F, Salemi G, Cammarata E, Simone I, Salvatore M, Bonavita V, Alfano B J Neurol Sci (ISSN: 0022-510x), 2007 Dec 15; 263(1-2): 15-19.
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* An ontology approach for classification of abnormal white matter in patients with Multiple Sclerosis (91 views) (PDF 81 views)Alfano B, Brunetti A, De Pietro G, Esposito A Lecture Notes In Computer Science (ISSN: 0302-9743, 0302-974335404636319783540463634, 0302-974335402975459783540297543), 2007; 4799LNCS: 389-402.
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* An ontology-based technique for validation of MRI brain segmentation methods (96 views) (PDF 69 views)Alfano B, Comerci M, De Pietro G, Esposito A Lecture Notes In Computer Science (ISSN: 0302-9743, 0302-974335404636319783540463634, 0302-974335402975459783540297543), 2007; 4805LNCS(PART1): 566-575.
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* Modifications of brain tissue volumes in facioscapulohumeral dystrophy (115 views)Quarantelli M, Lanzillo R, Del Vecchio W, Mollica C, Prinster A, Iadicicco L, Iodice V, Santoro L, Salvatore M Neuroimage (ISSN: 1053-8119, 1053-8119linking), 2006 Sep; 32(3): 1237-1242.
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* Brain atrophy and lesion load in a large population of patients with multiple sclerosis (91 views) (PDF 80 views)Tedeschi G, Lavorgna L, Russo P, Prinster A, Dinacci D, Savettieri G, Quattrone A, Livrea P, Messina C, Reggio A, Bresciamorra V, Orefice G, Paciello M, Brunetti A, Coniglio G, Bonavita S, Di Costanzo A, Bellacosa A, Valentino P, Quarantelli M, Patti F, Salemi G, Cammarata E, Simone IL, Salvatore M, Bonavita V, Alfano B Neurology (ISSN: 0028-3878, 1526-632x), 2005 Jul 26; 65(2): 280-285.
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* Automated brain MR segmentation in a large MS population (84 views)Tedeschi G, Dinacci D, Lavorgna L, Bonavita V, Livrea P, Quattrone A, Messina C, Savettieri G, Paciello M, Reggio A, Brunetti A, Russo P, Alfano B Neurology (ISSN: 0028-3878, 1526-632x), 2004 Apr 13; 62(7): N/D-N/D.
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* Integrated software for the analysis of brain PET/SPECT studies with partial-volume-effect correction (83 views) (PDF 65 views)Quarantelli M, Berkouk K, Prinster A, Landeau B, Svarer C, Balkay L, Alfano B, Brunetti A, Baron JC, Salvatore M Journal Of Nuclear Medicine (ISSN: 0161-5505, 1535-5667, 1535-5667electronic), 2004 Feb; 45(2): 192-201.
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* Brain tissue volume changes in relapsing-remitting multiple sclerosis: Correlation with lesion load (98 views) (PDF 63 views)Quarantelli M, Ciarmiello A, Morra VB, Orefice G, Larobina M, Lanzillo R, Schiavone V, Salvatore E, Alfano B, Brunetti A Neuroimage (ISSN: 1053-8119, 1053-8119linking), 2003 Feb; 18(2): 360-366.
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Measurement of global brain atrophy in Alzheimer's disease with unsupervised segmentation of spin-echo MRI studies (94 views) (PDF 92 views)Brunetti A, Postiglione A, Tedeschi E, Ciarmiello A, Quarantelli M, Covelli EM, Milan G, Larobina M, Soricelli A, Sodano A, Alfano B Journal Of Magnetic Resonance Imaging (ISSN: 1053-1807), 2000 Mar; 11(3): 260-266.
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Measurement of global drain atrophy in Alzheimer's disease with unsupervised segmentation of spin-echo MRI studies (74 views)Brunetti A, Postiglione A, Tedeschi E, Ciarmiello A, Quarantelli M, Covelli E, Milan G, Larobina M, Soricelli A, Sodano A, Alfano B Journal Of Magnetic Resonance Imaging (ISSN: 1053-1807), 2000 Mar; 11(3): N/D-N/D.
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Automatic segmentation and evaluation of the volume of gray matter, white matter and cerebrospinal fluid by MRI (75 views)ALFANO B, ARPAIA M, BRUNETTI A, COVELLI E, CASTELLI L, CARACO C, SORICELLI A, TEDESCHI E, SALVATORE M Neuroradiology 1994, 1994; N/D: N/D-N/D.
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35 Records ( 25 excluding Abstracts and Conferences). Total impact factor: 92.931 ( 72.886 excluding Abstracts and Conferences). Total 5-year impact factor: 97.871 ( 75.683 excluding Abstracts and Conferences).
Your bibliography query: ([btitle, keywords, abstract] SEGMENTATION)
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Last modified by Marco Comerci on Wednesday 27 April 2016, 11:53:42 3094 views. Last viewed on Wednesday 12 July 2017, 3:27:52
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