The Intrinsic Stability Of The Human Prion Beta-Sheet Region Investigated By Molecular Dynamics(577 views) De Simonea A, Stanzione F, Marasco D, Vitagliano L, Esposito L
Journal Of Biomolecular Structure & Dynamics, 2013 May 1; 31(5): 441-452.
Keywords: Computer Simulations, Neurodegenerative Diseases, Prion Peptide Stability, Prion Toxicity, Prion Protein, Article, Beta Sheet, Carboxy Terminal Sequence, Cytotoxicity, Dimerization, Homozygosity, Human, Molecular Dynamics, Molecular Interaction, Point Mutation, Prion Disease, Priority Journal, Protein Aggregation, Protein Analysis, Protein Assembly, Protein Conformation, Protein Folding, Protein Stability, Protein Structure, Amino Acid Sequence, Hydrogen Bonding, Molecular Dynamics Simulation, Missense, Secondary, Thermodynamics,
Affiliations: *** IBB - CNR ***
Division of Molecular Biosciences, Imperial College South Kensington Campus, London, SW7 2AZ, United Kingdom
Istituto di Biostrutture e Bioimmagini, CNR, Via Mezzocannone 16, I-80134 Napoli, Italy
Dipartimento Delle Scienze Biologiche, Universit di Napoli Federico II, Napoli, Italy
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Dima, R.I., Thirumalai, D., Probing the instabilities in the dynamics of helical fragments from mouse PrPC (2004) Proceedings of the National Academy of Sciences USA, 101, pp. 15335-15340
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Haire, L.F., Whyte, S.M., Vasisht, N., Gill, A.C., Verma, C., Bayley, P.M., The crystal structure of the globular domain of sheep prion protein (2004) Journal of Molecular Biology, 336, pp. 1175-1183
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Ji, H.F., Zhang, H.Y., Shen, L., The role of electrostatic interaction in triggering the unraveling of stable helix 1 in normal prion protein. A molecular dynamics simulation investigation (2005) Journal of Biomolecular Structure & Dynamics, 22, pp. 563-570
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O'Brien, E.P., Okamoto, Y., Straub, J.E., Brooks, B.R., Thirumalai, D., Thermodynamic perspective on the dock-lock growth mechanism of amyloid fibrils (2009) The Journal of Physical Chemistry B, 113, pp. 14421-14430
Palmer, M.S., Dryden, A.J., Hughes, J.T., Collinge, J., Homozygous prion protein genotype predisposes to sporadic Creutzfeldt-Jakob disease (1991) Nature, 352, pp. 340-342
Panegyres, P.K., Toufexis, K., Kakulas, B.A., Cernevakova, L., Brown, P., Ghetti, B., Dlouhy, S.R., A new PRNP mutation (G131V) associated with Gerstmann- Straussler-Scheinker disease (2001) Archives of Neurology, 58, pp. 1899-1902
Prusiner, S.B., Prions (1998) Proceedings of the National Academy of Sciences USA, 95, pp. 13363-13383
Richardson, J.S., Richardson, D.C., Natural beta-sheet proteins use negative design to avoid edge-to-edge aggregation (2002) Proceedings of the National Academy of Sciences USA, 99, pp. 2754-2759
Samson, A.O., Levitt, M., Normal modes of prion proteins: From native to infectious particle (2011) Biochemistry, 50, pp. 2243-2248
Sievers, S.A., Karanicolas, J., Chang, H.W., Zhao, A., Jiang, L., Zirafi, O., Eisenberg, D., Structure-based design of non-natural amino-acid inhibitors of amyloid fibril formation (2011) Nature, 475, pp. 96-100
Viles, J.H., Donne, D., Kroon, G., Prusiner, S.B., Cohen, F.E., Dyson, H.J., Wright, P.E., Local structural plasticity of the prion protein. Analysis of NMR relaxation dynamics (2001) Biochemistry, 40, pp. 2743-2753
Xue, W.F., Hellewell, A.L., Hewitt, E.W., Radford, S.E., Fibril fragmentation in amyloid assembly and cytotoxicity: When size matters (2010) Prion, 4, pp. 20-25
Zhang, J., Liu, D.D., Molecular dynamics studies on the structural stability of wild-type dog prion protein (2011) Journal of Biomolecular Structure & Dynamics, 28, pp. 861-869
The Intrinsic Stability Of The Human Prion Beta-Sheet Region Investigated By Molecular Dynamics