Structural and enzymatic properties of an in vivo proteolytic form of PD-S2, type 1 ribosome-inactivating protein from seeds of Phytolacca dioica(356 views) Di Maro A, Berisio R, Ruggiero A, Tamburino R, Severino V, Zacchia E, Parente A
Biochem Biophys Res Commun (ISSN: 0006-291x), 2012 May 11; 421(3): 514-520.
Keywords: 3d Modeling, Circular Dichroic Spectroscopy, Phytolacca Dioica, Proteolytic Regulation, Ribosome-Inactivating Proteins, Phytolacca Dioica S2 Protein, Unclassified Drug, Vegetable Protein, Article, Controlled Study, Enzyme Activity, In Vitro Study, In Vivo Study, Nonhuman, Plant Seed, Pokeweed, Priority Journal, Protein Degradation, Protein Folding, Protein Synthesis, Purification, Seed Development, Thermostability, Amino Acids, Essential, Germination, Protein Biosynthesis, Protein Conformation, Protein Stability, Proteolysis, Ribosome Inactivating Proteins, Type 1,
Affiliations: *** IBB - CNR ***
Dipartimento di Scienze della Vita, Seconda Università di Napoli, Via Vivaldi 43, I-81100 Caserta, Italy
Istituto di Biostrutture e Bioimmagini, C.N.R., Via Mezzocannone 16, I-80134 Napoli, Italy
References: Girbes, T., Ferreras, J.M., Arias, F.J., Stirpe, F., Description, distribution, activity and phylogenetic relationship of ribosome-inactivating proteins in plants, fungi and bacteria (2004) Mini Rev. Med. Chem., 4, pp. 461-47
Barbieri, L., Battelli, M.G., Stirpe, F., Ribosome-inactivating proteins from plants (1993) Biochim. Biophys. Acta, 1154, pp. 237-282
Zhabokritsky, A., Kutky, M., Burns, L.A., Karran, R.A., Hudak, K.A., RNA toxins: mediators of stress adaptation and pathogen defense (2011) Wiley Interdiscip. Rev. RNA, 2, pp. 900-903
Wang, M., Hudak, K.A., Applications of plant antiviral proteins (2003) Genet. Eng. (NY), 25, pp. 143-161
Stirpe, F., Battelli, M.G., Ribosome-inactivating proteins: progress and problems (2006) Cell. Mol. Life Sci., 63, pp. 1850-1866
Corrado, G., Delli Bovi, P., Ciliento, R., Gaudio, L., Di Maro, A., Aceto, S., Lorito, M., Rao, R., Inducible expression of a Phytolacca heterotepala ribosome-inactivating protein leads to enhanced resistance against major fungal pathogens in tobacco (2005) Phytopathology, 95, pp. 206-215
de Virgilio, M., Lombardi, A., Caliandro, R., Fabbrini, M.S., Ribosome-inactivating proteins: from plant defense to tumor attack (2010) Toxins, 2, pp. 2699-2737
Parente, A., Berisio, R., Chambery, A., Di Maro, A., Type 1 ribosome-inactivating proteins from the Ombú Tree (Phytolacca dioica L.) (2010) Toxic Plant Proteins, pp. 79-106. , Springer-Verlag, Berlin, Heidelberg, L.M. Lord, M.R.R. Hartley (Eds.)
Di Maro, A., Valbonesi, P., Bolognesi, A., Stirpe, F., De Luca, P., Siniscalco Gigliano, G., Gaudio, L., Parente, A., Isolation and characterization of four type-1 ribosome-inactivating proteins, with polynucleotide:adenosine glycosidase activity, from leaves of Phytolacca dioica L. (1999) Planta, 208, pp. 125-131
Di Maro, A., Chambery, A., Carafa, V., Costantini, S., Colonna, G., Parente, A., Structural characterization and comparative modeling of PD-Ls 1-3, type 1 ribosome-inactivating proteins from summer leaves of Phytolacca dioica L. (2009) Biochimie, 91, pp. 352-363
Aceto, S., Di Maro, A., Conforto, B., Siniscalco, G.G., Parente, A., Delli Bovi, P., Gaudio, L., Nicking activity on pBR322 DNA of ribosome inactivating proteins from Phytolacca dioica L. leaves (2005) Biol. Chem., 386, pp. 307-317
Parente, A., Conforto, B., Di Maro, A., Chambery, A., De Luca, P., Bolognesi, A., Iriti, M., Faoro, F., Type 1 ribosome-inactivating proteins from Phytolacca dioica L. leaves: differential seasonal and age expression, and cellular localization (2008) Planta, 228, pp. 963-975
Parente, A., De Luca, P., Bolognesi, A., Barbieri, L., Battelli, M.G., Abbondanza, A., Sande, M.J., Stirpe, F., Purification and partial characterization of single-chain ribosome-inactivating proteins from the seeds of Phytolacca dioica L. (1993) Biochim. Biophys. Acta, 1216, pp. 43-49
Shutov, A.D., Vaintraub, I.A., Degradation of storage proteins in germinating seeds (1987) Phytochemistry, 26, pp. 1557-1566
Muntz, K., Belozersky, M.A., Dunaevsky, Y.E., Schlereth, A., Tiedemann, J., Stored proteinases and the initiation of storage protein mobilization in seeds during germination and seedling growth (2001) J. Exp. Bot., 52, pp. 1741-1752
Barnesa, D.J., Baldwinb, B.S., Braascha, D.A., Ricin accumulation and degradation during castor seed development and late germination (2009) Ind. Crops Prod., 30, pp. 254-258
Laemmli, U.K., Johnson, R.A., Maturation of the head of bacteriophage T4. II. Head-related, aberrant tau-particles (1973) J. Mol. Biol., 80, pp. 601-611
Johnson, W.C., Analysis of circular dichroism spectra (1992) Methods Enzymol., 210, pp. 426-447
Barbieri, L., Valbonesi, P., Bonora, E., Gorini, P., Bolognesi, A., Stirpe, F., Polynucleotide:adenosine glycosidase activity of ribosome-inactivating proteins: effect on DNA, RNA and poly(A) (1997) Nucleic Acids Res., 25, pp. 518-522
Bordoli, L., Kiefer, F., Arnold, K., Benkert, P., Battey, J., Schwede, T., Protein structure homology modeling using SWISS-MODEL workspace (2009) Nat. Protoc., 4, pp. 1-13
Van Der Spoel, D., Lindahl, E., Hess, B., Groenhof, G., Mark, A.E., Berendsen, H.J., GROMACS: fast, flexible, and free (2005) J. Comput. Chem., 26, pp. 1701-1718
Del Vecchio Blanco, F., Bolognesi, A., Malorni, A., Sande, M.J., Savino, G., Parente, A., Complete amino-acid sequence of PD-S2, a new ribosome-inactivating protein from seeds of Phytolacca dioica L. (1997) Biochim. Biophys. Acta, 1338, pp. 137-144
Odani, S., Ikenaka, T., Scission of soybean Bowman-Birk proteinase inhibitor into two small fragments having either trypsin or chymotrypsin inhibitory activity (1973) J. Biochem., 74, pp. 857-860
Müntz, K.A., Blattner, F.R.A., Shutov, A.D.B., Legumains - a family of asparagine-specific cysteine endopeptidases involved in propolypeptide processing and protein breakdown in plants (2002) J. Plant Physiol., 159, pp. 1281-1293
Muntz, K., Shutov, A.D., Legumains and their functions in plants (2002) Trends Plant Sci., 7, pp. 340-344
Shutov, A.D., Blattner, F.R., Kakhovskaya, I.A., Muntz, K., New aspects of the molecular evolution of legumains, Asn-specific cysteine proteinases (2011) J. Plant Physiol., 169, pp. 319-321
Iglesias, R., Perez, Y., Citores, L., Ferreras, J.M., Mendez, E., Girbes, T., Elicitor-dependent expression of the ribosome-inactivating protein beetin is developmentally regulated (2008) J. Exp. Bot., 59, pp. 1215-1223
Shutov, A. D., Vaintraub, I. A., Degradation of storage proteins in germinating seeds (1987) Phytochemistry, 26, pp. 1557-1566
Barnesa, D. J., Baldwinb, B. S., Braascha, D. A., Ricin accumulation and degradation during castor seed development and late germination (2009) Ind. Crops Prod., 30, pp. 254-258
Laemmli, U. K., Johnson, R. A., Maturation of the head of bacteriophage T4. II. Head-related, aberrant tau-particles (1973) J. Mol. Biol., 80, pp. 601-611
Johnson, W. C., Analysis of circular dichroism spectra (1992) Methods Enzymol., 210, pp. 426-447
M ntz, K. A., Blattner, F. R. A., Shutov, A. D. B., Legumains - a family of asparagine-specific cysteine endopeptidases involved in propolypeptide processing and protein breakdown in plants (2002) J. Plant Physiol., 159, pp. 1281-1293
Shutov, A. D., Blattner, F. R., Kakhovskaya, I. A., Muntz, K., New aspects of the molecular evolution of legumains, Asn-specific cysteine proteinases (2011) J. Plant Physiol., 169, pp. 319-321
Structural and enzymatic properties of an in vivo proteolytic form of PD-S2, type 1 ribosome-inactivating protein from seeds of Phytolacca dioica