Keywords: Complex Networks, Fractal Analysis, Fractal-Shape, Hydrophobic Core, Hydrophobic Effect, Large Database, Order Parameter, Organizational Principles, Protein Data, Protein Structures, Hydrophobicity, Article, Chemical Phenomena, Chemistry, Protein Conformation, Protein Database, Hydrophobic And Hydrophilic Interactions,
Affiliations: *** IBB - CNR ***
Università Campus Biomedico, via Alvaro del Portillo 21, 00128 Rome, Italy
CNR-Institute of Systems Analysis and Computer Science (IASI), BioMathLab, viale Manzoni 30, 00185 Rome, Italy
Department of Environment and Health, Istituto Superiore di Sanità, Viale Regina Elena 299, 00161 Rome, Italy
Universit Campus Biomedico, via Alvaro del Portillo 21, 00128 Rome, Italy
References: Banerji, A., Ghosh, I., (2009) PloS One, 4, p. 736
Zbilut, J., Chua, G., Krishnan, A., Bossa, C., Rother, K., Webber, C., Giuliani, A., (2007) Proteins: Struct., Funct., Bioinf., 66, pp. 621-629
Natarajan, V., Koehl, P., Wang, Y., Hamann, B., Visual Analysis of Biomolecular Surfaces (2007) Mathematical Methods for Visualization in Medicine and Life Sciences, , In
Linsen, L. Hagen, H. Hamann, B. Mathematics and Visualization Series
Springer Verlag: Berlin
Wang, Y., (2004), Ph.D. Thesis, Department of Computer Science, Duke UniversityHopfinger, A., (1983) J. Med. Chem., 26, pp. 990-996
Arteca, G., (1993) Biopolymers, 33, pp. 1829-1841
Heckman, C., (1990) Cytometry, 11, pp. 771-783
Colafranceschi, M., Colosimo, A., Zbilut, J., Uversky, V., Giuliani, A., (2005) J. Chem. Inf. Model., 45, pp. 183-189
Emberly, E., Mukhopadhyay, R., Tang, C., Wingreen, N., (2004) Proteins: Struct., Funct., Bioinf., 55, pp. 91-98
Bloom, J., Drummond, D., Arnold, F., Wilke, C., (2006) Mol. Biol. Evol., 23, pp. 1751-1761
Benigni, R., Giuliani, A., (1994) Am. J. Physiol., 266, pp. 1697-R1704
Christie, O., (1995) Chemom. Intell. Lab. Syst., 29, pp. 177-188
Preisendorfer, R., (1988) Principal Component Analysis in Meteorology and Oceanography, , Elsevier
Dill, K., (1990) Biochemistry, 29, pp. 7133-7155
Vajda, S., Sippl, M., Novotny, J., (1997) Curr. Opin. Struct. Biol., 7, pp. 222-228
Giuliani, A., Di Paola, L., Setola, R., (2009) Curr. Proteomics, 6, pp. 235-245
Cotta-Ramusino, M., Benigni, R., Passerini, L., Giuliani, A., (2003) J. Chem. Inf. Comput. Sci., 43, pp. 248-254
Jackson, D., (1993) Ecology, 74, pp. 2204-2214
Takeda, M., Kirihara, S., Miyamoto, Y., Kazuaki, S., Honda, K., (2004) Phys. Rev. Lett., 92, p. 093902
Giuliani, A., Zbilut, J., Tomita, M., (2007) J. Proteome Res., 6, pp. 3924-3934
Kannan, N., Vishveshwara, S., (1999) J. Mol. Biol., 292, pp. 441-464
Amitai, G., Shemesh, A., Sitbon, E., Shklar, M., Netanely, D., Venger, I., Pietrokovski, S., (2004) J. Mol. Biol., 344, pp. 1135-1146