Probing the activity of diguanylate cyclases and c-di-GMP phosphodiesterases in real-time by CD spectroscopy(664 views) Stelitano V, Brandt A, Fernicola S, Franceschini S, Giardina G, Pica A, Rinaldo S, Sica F, Cutruzzola F
Istituto Pasteur-Fondazione Cenci Bolognetti, Department of Biochemical Sciences, Sapienza University of Rome, 00185 Rome, Italy
Department of Chemical Sciences, University of Naples Federico II, 80126 Naples, Italy
Institute of Biostructure and Bioimaging, CNR, 80134 Naples, Italy
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Ryan, R.P., Tolker-Nielsen, T., Dow, J.M., When the PilZ don't work: Effectors for cyclic di-GMP action in bacteria (2012) Trends Microbiol, 20, pp. 235-242
Ko, J., Ryu, K.S., Kim, H., Shin, J.S., Lee, J.O., Cheong, C., Choi, B.S., Structure of PP4397 reveals the molecular basis for different c-di-GMP binding modes by Pilz domain proteins (2010) J. Mol. Biol, 398, pp. 97-110
Yang, C.Y., Chin, K.H., Chuah, M.L., Liang, Z.X., Wang, A.H., Chou, S.H., The structure and inhibition of a GGDEF diguanylate cyclase complexed with (c-di-GMP)(2) at the active site (2011) Acta Crystallogr. D Biol. Crystallogr, 67, pp. 997-1008
Navarro, M.V., De, N., Bae, N., Wang, Q., Sondermann, H., Structural analysis of the GGDEF-EAL domain-containing c-di-GMP receptor FimX (2009) Structure, 17, pp. 1104-1116
Tuckerman, J.R., Gonzalez, G., Sousa, E.H., Wan, X., Saito, J.A., Alam, M., Gilles-Gonzalez, M.A., An oxygen-sensing diguanylate cyclase and phosphodiesterase couple for c-di-GMP control (2009) Biochemistry, 48, pp. 9764-9774
Neunuebel, M.R., Golden, J.W., The Anabaena sp. strain PCC 7120 gene all2874 encodes a diguanylate cyclase and is required for normal heterocyst development under high-light growth conditions (2008) J. Bacteriol, 190, pp. 6829-6836
Sultan, S.Z., Pitzer, J.E., Boquoi, T., Hobbs, G., Miller, M.R., Motaleb, M.A., Analysis of the HD-GYP domain cyclic dimeric GMP phosphodiesterase reveals a role in motility and the enzootic life cycle of Borrelia burgdorferi (2011) Infect. Immun, 79, pp. 3273-3283
Lai, T.H., Kumagai, Y., Hyodo, M., Hayakawa, Y., Rikihisa, Y., The Anaplasma phagocytophilum PleC histidine kinase and PleD diguanylate cyclase two-component system and role of cyclic Di-GMP in host cell infection (2009) J. Bacteriol, 191, pp. 693-700
He, Y.W., Boon, C., Zhou, L., Zhang, L.H., Co-regulation of Xanthomonas campestris virulence by quorum sensing and a novel two-component regulatory system RavS/RavR (2009) Mol. Microbiol, 71, pp. 1464-1476
Barends, T.R., Hartmann, E., Griese, J.J., Beitlich, T., Kirienko, N.V., Ryjenkov, D.A., Reinstein, J., Schlichting, I., Structure and mechanism of a bacterial light-regulated cyclic nucleotide phosphodiesterase (2009) Nature, 459, pp. 1015-1018
Ryan, R.P., Fouhy, Y., Lucey, J.F., Crossman, L.C., Spiro, S., He, Y.W., Zhang, L.H., Williams, P., Cell-cell signaling in Xanthomonas campestris involves an HD-GYP domain protein that functions in cyclic di-GMP turnover (2006) Proc. Natl Acad. Sci. USA, 103, pp. 6712-6717
Sharma, I.M., Dhanaraman, T., Mathew, R., Chatterji, D., Synthesis and Characterization of a fluorescent analogue of cyclic di-GMP (2012) Biochemistry, 51, p. 5443
Sheldrick, G.M., A short history of SHELX (2008) Acta Crystallogr. A, 64, pp. 112-122
Kelly, S.M., Price, N.C., The use of circular dichroism in the investigation of protein structure and function (2000) Curr. Protein Pept. Sci, 1, pp. 349-384
Liaw, Y.-C., Gao, Y.-G., Robinson, H., Sheldrick, G.M., Sliedregt, L.A.J.M., Van Der Marel, G.A., Van Boom, J.H., Wang, A.H.-J., Cyclic diguanylic acid behaves as a host molecule for planar intercalators (1990) FEBS Letters, 264 (2), pp. 223-227. , DOI 10.1016/0014-5793(90)80253-F
Eichhorn, G.L., Shin, Y.A., Interaction of metal ions with polynucleotides and related compounds: Part XII. The relative effect of various metal ions on DNA helicity (1968) J. Am. Chem. Soc, 90, pp. 7323-7328
Sponer, J.E., Sychrovsky, V., Hobza, P., Sponer, J., Interactions of hydrated divalent metal cations with nucleic acid bases. How to relate the gas phase data to solution situation and binding selectivity in nucleic acids (2004) Phys. Chem. Chem. Phys, 6, pp. 2772-2780
Malone, J.G., Jaeger, T., Manfredi, P., Dotsch, A., Blanka, A., Bos, R., Cornelis, G.R., Jenal, U., The YfiBNR signal transduction mechanism reveals novel targets for the evolution of persistent Pseudomonas aeruginosa in cystic fibrosis airways (2012) PLoS Pathog, 8, pp. e1002760
Massie, J.P., Reynolds, E.L., Koestler, B.J., Cong, J.P., Agostoni, M., Waters, C.M., Quantification of high-specificity cyclic diguanylate signaling (2012) Proc. Natl Acad. Sci. USA, 109, pp. 12746-12751
Probing the activity of diguanylate cyclases and c-di-GMP phosphodiesterases in real-time by CD spectroscopy
Petraglia F, Singh AA, Carafa V, Nebbioso A, Conte M, Scisciola L, Valente S, Baldi A, Mandoli A, Petrizzi VB, Ingenito C, De Falco S, Cicatiello V, Apicella I, Janssen-megens EM, Kim B, Yi G, Logie C, Heath S, Ruvo M, Wierenga ATJ, Flicek P, Yaspo ML, Della Valle V, Bernard O, Tomassi S, Novellino E, Feoli A, Sbardella G, Gut I, Vellenga E, Stunnenberg HG, Mai A, Martens JHA, Altucci L * Combined HAT/EZH2 modulation leads to cancer-selective cell death(288 views) Oncotarget (ISSN: 1949-2553electronic, 1949-2553linking), 2018 May 22; 9(39): 25630-25646. Impact Factor:5.008 ViewExport to BibTeXExport to EndNote