Contribution of dipole-dipole interactions to the stability of the collagen triple helix (405 views)
Protein Sci (ISSN: 0961-8368, 1469-896xelectronic), 2008 May; 17(5): 955-961.
Export to BibTeX Export to EndNote
Paper type: Journal Article,
Impact factor: 3.115, 5-year impact factor: 3.484
Url: http://www.scopus.com/inward/record.url?eid=2-s2.0-43049098250&partnerID=40&md5=f5455e8b3243c6c6793dab5e71d95357
Keywords: Collagen, Imino Acids, Protein-Protein Association, Quantum Chemistry, Triple Helix, Glycine, Hydroxyproline, Article, Dipole, Priority Journal, Protein Motif, Protein Stability, Protein Structure, Structure Analysis, X Ray Analysis, Amino Acid Motifs, Animals, Crystallography, X-Ray, Humans, Peptides,
Affiliations:
*** IBB - CNR ***
Istituto di Biostrutture e Bioimmagini, CNR, I-80134 Napoli, Italy
References:
Adamo, C., Barone, V., Toward reliable density functional methods without adjustable parameters: The PBE0 model (1999) J. Chem. Phys, 110, pp. 6158-617
Bann, J.G., Bachinger, H.P., Glycosylation/hydroxylationinduced stabilization of the collagen triple helix. 4-trans-hydroxyproline in the Xaa position can stabilize the triple helix (2000) J. Biol. Chem, 275, pp. 24466-24469
Barone, V., Newton, M.D., Improta, R., Dissociative electron transfer in D-peptide-A systems: Results for kinetic parameters from a density functional/polarizable continuum model (2006) J. Phys. Chem, 110, p. 12632
Bella, J., Brodsky, B., Berman, H.M., Hydration structure of a collagen peptide (1995) Structure, 3, pp. 893-906
Berisio, R., Vitagliano, L., Mazzarella, L., Zagari, A., Recent progress on collagen triple helix structure, stability and assembly (2002) Protein Pept. Lett, 9, pp. 107-116
Berisio, R., Granata, V., Vitagliano, L., Zagari, A., Imino acids and collagen triple helix stability: Characterization of collagen-like polypeptides containing Hyp-Hyp-Gly sequence repeats (2004) J. Am. Chem. Soc, 126, pp. 11402-11403
Berisio, R., Loguercio, S., De Simone, A., Zagari, A., Vitagliano, L., Polyproline helices in protein structures: A statistical survey (2006) Protein Pept. Lett, 13, pp. 847-854
Berman, H.M., Bhat, T.N., Bourne, P.E., Feng, Z., Gilliland, G., Weissig, H., Westbrook, J., The Protein Data Bank and the challenge of structural genomics (2000) Nat. Struct. Biol, 7 (SUPPL.), pp. 957-959
Besler, B.H., Merz, K.M., Kollman, P.A., Atomic charges derived from semiempirical methods (1990) J. Comput. Chem, 11, pp. 431-439
Boys, S.F., Bernardi, F., The calculation of small molecular interactions by the differences of separate total energies. Some procedures with reduced errors (1970) Mol. Phys, 19, pp. 553-566
Brodsky, B., Persikov, A.V., Molecular structure of the collagen triple helix (2005) Adv. Protein Chem, 70, pp. 301-339
Burjanadze, T.V., New analysis of the phylogenetic change of collagen thermostability (2000) Biopolymers, 53, pp. 523-528
Doi, M., Nishi, Y., Uchiyama, S., Nishiuchi, Y., Nishio, H., Nakazawa, T., Ohkubo, T., Kobayashi, Y., Collagen-like triple helix formation of synthetic (Pro-Pro-Gly)10 analogues: (4(S)-hydroxyprolyl-4(R)-hydroxyprolyl-Gly) 10, (4(R)-hydroxyprolyl-4(R)-hydroxyprolyl-Gly)10 and (4(S)-fluoroprolyl-4(R)- fluoroprolyl-Gly)10 (2005) J. Pept. Sci, 11, pp. 609-616
Ernzerhof, M.S., Scuseria, G.E., Assessment of the Perdew-Burke-Ernzerhof exchange-correlation functional (1999) J. Chem. Phys, 110, pp. 5029-5036
Foster, J.P., Weinhold, F., Natural hybrid orbitals (1980) J. Am. Chem. Soc, 102, pp. 7211-7218
Frisch, M.J., Trucks, G.W., Schlegel, H.B., Scuseria, G.E., Robb, M.A., Cheeseman, J.R., Montgomery, J.J.A., Burant, J.C., (2003) Gaussian 03, Revision B.05, , Gaussian, Inc, Pittsburgh, PA
Gauba, V., Hartgerink, J.D., Self-assembled heterotrimeric collagen triple helices directed through electrostatic interactions (2007) J. Am. Chem. Soc, 129, pp. 2683-2690
Hodges, J.A., Raines, R.T., Stereoelectronic and steric effects in the collagen triple helix: Toward a code for strand association (2005) J. Am. Chem. Soc, 127, pp. 15923-15932
Holmgren, S.K., Taylor, K.M., Bretscher, L.E., Raines, R.T., Code for collagen's stability deciphered (1998) Nature, 392, pp. 666-667
Holmgren, S.K., Bretscher, L.E., Taylor, K.M., Raines, R.T., A hyperstable collagen mimic (1999) Chem. Biol, 6, pp. 63-70
Improta, R., Barone, V., Assessing the reliability of density functional methods in the conformational study of polypeptides: The treatment of intraresidue nonbonding interactions (2004) J. Comput. Chem, 25, pp. 1333-1341
Improta, R., Benzi, C., Barone, V., Understanding the role of stereoelectronic effects in determining collagen stability. 1. A quantum mechanical study of proline, hydroxyproline, and fluoroproline dipeptide analogues in aqueous solution (2001) J. Am. Chem. Soc, 123, pp. 12568-12577
Improta, R., Mele, F., Crescenzi, O., Benzi, C., Barone, V., Understanding the role of stereoelectronic effects in determining collagen stability. 2. A quantum mechanical/molecular mechanical study of (Proline-Proline-Glycine)(n) polypeptides (2002) J. Am. Chem. Soc, 124, pp. 7857-7865
Improta, R., Antonello, S., Formaggio, F., Maran, F., Rega, N., Barone, V., Understanding electron transfer across negatively-charged Aib oligopeptides (2005) J. Phys. Chem, 109, pp. 1023-1033
Inouye, K., Kobayashi, Y., Kyogoku, Y., Kishida, Y., Sakakibara, S., Prockop, D.J., Synthesis and physical properties of (hydroxyprolineproline- glycine)10: Hydroxyproline in the X-position decreases the melting temperature of the collagen triple helix (1982) Arch. Biochem. Biophys, 219, pp. 198-203
Jenkins, C.L., Raines, R.T., Insights on the conformational stability of collagen (2002) Nat. Prod. Rep, 19, pp. 49-59
Jiravanichanun, N., Hongo, C., Wu, G., Noguchi, K., Okuyama, K., Nishino, N., Silva, T., Unexpected puckering of hydroxyproline in the guest triplets, hyp-pro-gly and pro-allohyp-gly sandwiched between pro-pro-gly sequence (2005) ChemBioChem, 6, pp. 1184-1187
Kamiya, M., Tsuneda, T., Hirao, K., A density functional theory of van der Waals interactions (2002) J. Chem. Phys, 117, pp. 6010-6015
Kawahara, K., Nishi, Y., Nakamura, S., Uchiyama, S., Nishiuchi, Y., Nakazawa, T., Ohkubo, T., Kobayashi, Y., Effect of hydration on the stability of the collagen-like triple-helical structure of [4(R)-hydroxyprolyl- 4(R)-hydroxyprolylglycine]10 (2005) Biochemistry, 44, pp. 15812-15822
Langella, E., Improta, R., Barone, V., Conformational and spectroscopic analysis of the tyrosyl radical dipeptide analogue in the gas phase and in aqueous solution by a density functional/continuum solvent model (2002) J. Am. Chem. Soc, 124, pp. 11531-11540
Mizuno, K., Hayashi, T., Bachinger, H.P., Hydroxylation-induced stabilization of the collagen triple helix. Further characterization of peptides with 4(R)-hydroxyproline in the Xaa position (2003) J. Biol. Chem, 278, pp. 32373-32379
Okuyama, K., Narita, H., Kawaguchi, T., Noguchi, K., Tanaka, Y., Nishino, N., Unique side chain conformation of a leu residue in a triple-helical structure (2007) Biopolymers, 86, pp. 212-221
Persikov, A.V., Ramshaw, J.A., Kirkpatrick, A., Brodsky, B., Amino acid propensities for the collagen triple-helix (2000) Biochemistry, 39, pp. 14960-14967
Rucker, A.L., Pager, C.T., Campbell, M.N., Qualls, J.E., Creamer, T.P., Host-guest scale of left-handed polyproline II helix formation (2003) Proteins, 53, pp. 68-75
Schumacher, M., Mizuno, K., Bachinger, H.P., The crystal structure of the collagen-like polypeptide (glycyl-4(R)-hydroxyprolyl-4(R)- hydroxyprolyl) 9 at 1.55 Å resolution shows up-puckering of the proline ring in the Xaa position (2005) J. Biol. Chem, 280, pp. 20397-20403
Tsuzuki, S., Lüthi, H.P., Interaction energies of van der Waals and hydrogen bonded systems calculated using density functional theory: Assessing the PW91 model (2001) J. Chem. Phys, 114, pp. 3949-3957
Vitagliano, L., Berisio, R., Mastrangelo, A., Mazzarella, L., Zagari, A., Preferred proline puckerings in cis and trans peptide groups: Implications for collagen stability (2001) Protein Sci, 10, pp. 2627-2632
Wesolowski, T.A., Parisel, O., Ellinger, Y., Weber, J., Comparative study of benzene⋯X (X = O2, N2, CO) complexes using density functional theory: The importance of an accurate exchange-correlation energy density at high reduced density gradients (1997) J. Phys. Chem, 101, pp. 7818-7825
Zhao, Y., Schultz, N.E., Truhlar, D.G., Design of density functionals by combining the method of constraint satisfaction with parametrization for thermochemistry, thermochemical kinetics and noncovalent interactions (2006) J. Chem. Theory Comput, 2, pp. 364-382
Bann, J. G., Bachinger, H. P., Glycosylation/hydroxylationinduced stabilization of the collagen triple helix. 4-trans-hydroxyproline in the Xaa position can stabilize the triple helix (2000) J. Biol. Chem, 275, pp. 24466-24469
Berman, H. M., Bhat, T. N., Bourne, P. E., Feng, Z., Gilliland, G., Weissig, H., Westbrook, J., The Protein Data Bank and the challenge of structural genomics (2000) Nat. Struct. Biol, 7 (SUPPL.), pp. 957-959
Besler, B. H., Merz, K. M., Kollman, P. A., Atomic charges derived from semiempirical methods (1990) J. Comput. Chem, 11, pp. 431-439
Boys, S. F., Bernardi, F., The calculation of small molecular interactions by the differences of separate total energies. Some procedures with reduced errors (1970) Mol. Phys, 19, pp. 553-566
Burjanadze, T. V., New analysis of the phylogenetic change of collagen thermostability (2000) Biopolymers, 53, pp. 523-528
Ernzerhof, M. S., Scuseria, G. E., Assessment of the Perdew-Burke-Ernzerhof exchange-correlation functional (1999) J. Chem. Phys, 110, pp. 5029-5036
Foster, J. P., Weinhold, F., Natural hybrid orbitals (1980) J. Am. Chem. Soc, 102, pp. 7211-7218
Frisch, M. J., Trucks, G. W., Schlegel, H. B., Scuseria, G. E., Robb, M. A., Cheeseman, J. R., Montgomery, J. J. A., Burant, J. C., (2003) Gaussian 03, Revision B. 05, , Gaussian, Inc, Pittsburgh, PA
Hodges, J. A., Raines, R. T., Stereoelectronic and steric effects in the collagen triple helix: Toward a code for strand association (2005) J. Am. Chem. Soc, 127, pp. 15923-15932
Holmgren, S. K., Taylor, K. M., Bretscher, L. E., Raines, R. T., Code for collagen's stability deciphered (1998) Nature, 392, pp. 666-667
Holmgren, S. K., Bretscher, L. E., Taylor, K. M., Raines, R. T., A hyperstable collagen mimic (1999) Chem. Biol, 6, pp. 63-70
Jenkins, C. L., Raines, R. T., Insights on the conformational stability of collagen (2002) Nat. Prod. Rep, 19, pp. 49-59
Persikov, A. V., Ramshaw, J. A., Kirkpatrick, A., Brodsky, B., Amino acid propensities for the collagen triple-helix (2000) Biochemistry, 39, pp. 14960-14967
Rucker, A. L., Pager, C. T., Campbell, M. N., Qualls, J. E., Creamer, T. P., Host-guest scale of left-handed polyproline II helix formation (2003) Proteins, 53, pp. 68-75
Tsuzuki, S., L thi, H. P., Interaction energies of van der Waals and hydrogen bonded systems calculated using density functional theory: Assessing the PW91 model (2001) J. Chem. Phys, 114, pp. 3949-3957
Wesolowski, T. A., Parisel, O., Ellinger, Y., Weber, J., Comparative study of benzene X (X = O2, N2, CO) complexes using density functional theory: The importance of an accurate exchange-correlation energy density at high reduced density gradients (1997) J. Phys. Chem, 101, pp. 7818-7825
Protein Sci (ISSN: 0961-8368, 1469-896xelectronic), 2008 May; 17(5): 955-961.
Export to BibTeX Export to EndNote
Paper type: Journal Article,
Impact factor: 3.115, 5-year impact factor: 3.484
Url: http://www.scopus.com/inward/record.url?eid=2-s2.0-43049098250&partnerID=40&md5=f5455e8b3243c6c6793dab5e71d95357
Keywords: Collagen, Imino Acids, Protein-Protein Association, Quantum Chemistry, Triple Helix, Glycine, Hydroxyproline, Article, Dipole, Priority Journal, Protein Motif, Protein Stability, Protein Structure, Structure Analysis, X Ray Analysis, Amino Acid Motifs, Animals, Crystallography, X-Ray, Humans, Peptides,
Affiliations:
*** IBB - CNR ***
Istituto di Biostrutture e Bioimmagini, CNR, I-80134 Napoli, Italy
References:
Adamo, C., Barone, V., Toward reliable density functional methods without adjustable parameters: The PBE0 model (1999) J. Chem. Phys, 110, pp. 6158-617
Bann, J.G., Bachinger, H.P., Glycosylation/hydroxylationinduced stabilization of the collagen triple helix. 4-trans-hydroxyproline in the Xaa position can stabilize the triple helix (2000) J. Biol. Chem, 275, pp. 24466-24469
Barone, V., Newton, M.D., Improta, R., Dissociative electron transfer in D-peptide-A systems: Results for kinetic parameters from a density functional/polarizable continuum model (2006) J. Phys. Chem, 110, p. 12632
Bella, J., Brodsky, B., Berman, H.M., Hydration structure of a collagen peptide (1995) Structure, 3, pp. 893-906
Berisio, R., Vitagliano, L., Mazzarella, L., Zagari, A., Recent progress on collagen triple helix structure, stability and assembly (2002) Protein Pept. Lett, 9, pp. 107-116
Berisio, R., Granata, V., Vitagliano, L., Zagari, A., Imino acids and collagen triple helix stability: Characterization of collagen-like polypeptides containing Hyp-Hyp-Gly sequence repeats (2004) J. Am. Chem. Soc, 126, pp. 11402-11403
Berisio, R., Loguercio, S., De Simone, A., Zagari, A., Vitagliano, L., Polyproline helices in protein structures: A statistical survey (2006) Protein Pept. Lett, 13, pp. 847-854
Berman, H.M., Bhat, T.N., Bourne, P.E., Feng, Z., Gilliland, G., Weissig, H., Westbrook, J., The Protein Data Bank and the challenge of structural genomics (2000) Nat. Struct. Biol, 7 (SUPPL.), pp. 957-959
Besler, B.H., Merz, K.M., Kollman, P.A., Atomic charges derived from semiempirical methods (1990) J. Comput. Chem, 11, pp. 431-439
Boys, S.F., Bernardi, F., The calculation of small molecular interactions by the differences of separate total energies. Some procedures with reduced errors (1970) Mol. Phys, 19, pp. 553-566
Brodsky, B., Persikov, A.V., Molecular structure of the collagen triple helix (2005) Adv. Protein Chem, 70, pp. 301-339
Burjanadze, T.V., New analysis of the phylogenetic change of collagen thermostability (2000) Biopolymers, 53, pp. 523-528
Doi, M., Nishi, Y., Uchiyama, S., Nishiuchi, Y., Nishio, H., Nakazawa, T., Ohkubo, T., Kobayashi, Y., Collagen-like triple helix formation of synthetic (Pro-Pro-Gly)10 analogues: (4(S)-hydroxyprolyl-4(R)-hydroxyprolyl-Gly) 10, (4(R)-hydroxyprolyl-4(R)-hydroxyprolyl-Gly)10 and (4(S)-fluoroprolyl-4(R)- fluoroprolyl-Gly)10 (2005) J. Pept. Sci, 11, pp. 609-616
Ernzerhof, M.S., Scuseria, G.E., Assessment of the Perdew-Burke-Ernzerhof exchange-correlation functional (1999) J. Chem. Phys, 110, pp. 5029-5036
Foster, J.P., Weinhold, F., Natural hybrid orbitals (1980) J. Am. Chem. Soc, 102, pp. 7211-7218
Frisch, M.J., Trucks, G.W., Schlegel, H.B., Scuseria, G.E., Robb, M.A., Cheeseman, J.R., Montgomery, J.J.A., Burant, J.C., (2003) Gaussian 03, Revision B.05, , Gaussian, Inc, Pittsburgh, PA
Gauba, V., Hartgerink, J.D., Self-assembled heterotrimeric collagen triple helices directed through electrostatic interactions (2007) J. Am. Chem. Soc, 129, pp. 2683-2690
Hodges, J.A., Raines, R.T., Stereoelectronic and steric effects in the collagen triple helix: Toward a code for strand association (2005) J. Am. Chem. Soc, 127, pp. 15923-15932
Holmgren, S.K., Taylor, K.M., Bretscher, L.E., Raines, R.T., Code for collagen's stability deciphered (1998) Nature, 392, pp. 666-667
Holmgren, S.K., Bretscher, L.E., Taylor, K.M., Raines, R.T., A hyperstable collagen mimic (1999) Chem. Biol, 6, pp. 63-70
Improta, R., Barone, V., Assessing the reliability of density functional methods in the conformational study of polypeptides: The treatment of intraresidue nonbonding interactions (2004) J. Comput. Chem, 25, pp. 1333-1341
Improta, R., Benzi, C., Barone, V., Understanding the role of stereoelectronic effects in determining collagen stability. 1. A quantum mechanical study of proline, hydroxyproline, and fluoroproline dipeptide analogues in aqueous solution (2001) J. Am. Chem. Soc, 123, pp. 12568-12577
Improta, R., Mele, F., Crescenzi, O., Benzi, C., Barone, V., Understanding the role of stereoelectronic effects in determining collagen stability. 2. A quantum mechanical/molecular mechanical study of (Proline-Proline-Glycine)(n) polypeptides (2002) J. Am. Chem. Soc, 124, pp. 7857-7865
Improta, R., Antonello, S., Formaggio, F., Maran, F., Rega, N., Barone, V., Understanding electron transfer across negatively-charged Aib oligopeptides (2005) J. Phys. Chem, 109, pp. 1023-1033
Inouye, K., Kobayashi, Y., Kyogoku, Y., Kishida, Y., Sakakibara, S., Prockop, D.J., Synthesis and physical properties of (hydroxyprolineproline- glycine)10: Hydroxyproline in the X-position decreases the melting temperature of the collagen triple helix (1982) Arch. Biochem. Biophys, 219, pp. 198-203
Jenkins, C.L., Raines, R.T., Insights on the conformational stability of collagen (2002) Nat. Prod. Rep, 19, pp. 49-59
Jiravanichanun, N., Hongo, C., Wu, G., Noguchi, K., Okuyama, K., Nishino, N., Silva, T., Unexpected puckering of hydroxyproline in the guest triplets, hyp-pro-gly and pro-allohyp-gly sandwiched between pro-pro-gly sequence (2005) ChemBioChem, 6, pp. 1184-1187
Kamiya, M., Tsuneda, T., Hirao, K., A density functional theory of van der Waals interactions (2002) J. Chem. Phys, 117, pp. 6010-6015
Kawahara, K., Nishi, Y., Nakamura, S., Uchiyama, S., Nishiuchi, Y., Nakazawa, T., Ohkubo, T., Kobayashi, Y., Effect of hydration on the stability of the collagen-like triple-helical structure of [4(R)-hydroxyprolyl- 4(R)-hydroxyprolylglycine]10 (2005) Biochemistry, 44, pp. 15812-15822
Langella, E., Improta, R., Barone, V., Conformational and spectroscopic analysis of the tyrosyl radical dipeptide analogue in the gas phase and in aqueous solution by a density functional/continuum solvent model (2002) J. Am. Chem. Soc, 124, pp. 11531-11540
Mizuno, K., Hayashi, T., Bachinger, H.P., Hydroxylation-induced stabilization of the collagen triple helix. Further characterization of peptides with 4(R)-hydroxyproline in the Xaa position (2003) J. Biol. Chem, 278, pp. 32373-32379
Okuyama, K., Narita, H., Kawaguchi, T., Noguchi, K., Tanaka, Y., Nishino, N., Unique side chain conformation of a leu residue in a triple-helical structure (2007) Biopolymers, 86, pp. 212-221
Persikov, A.V., Ramshaw, J.A., Kirkpatrick, A., Brodsky, B., Amino acid propensities for the collagen triple-helix (2000) Biochemistry, 39, pp. 14960-14967
Rucker, A.L., Pager, C.T., Campbell, M.N., Qualls, J.E., Creamer, T.P., Host-guest scale of left-handed polyproline II helix formation (2003) Proteins, 53, pp. 68-75
Schumacher, M., Mizuno, K., Bachinger, H.P., The crystal structure of the collagen-like polypeptide (glycyl-4(R)-hydroxyprolyl-4(R)- hydroxyprolyl) 9 at 1.55 Å resolution shows up-puckering of the proline ring in the Xaa position (2005) J. Biol. Chem, 280, pp. 20397-20403
Tsuzuki, S., Lüthi, H.P., Interaction energies of van der Waals and hydrogen bonded systems calculated using density functional theory: Assessing the PW91 model (2001) J. Chem. Phys, 114, pp. 3949-3957
Vitagliano, L., Berisio, R., Mastrangelo, A., Mazzarella, L., Zagari, A., Preferred proline puckerings in cis and trans peptide groups: Implications for collagen stability (2001) Protein Sci, 10, pp. 2627-2632
Wesolowski, T.A., Parisel, O., Ellinger, Y., Weber, J., Comparative study of benzene⋯X (X = O2, N2, CO) complexes using density functional theory: The importance of an accurate exchange-correlation energy density at high reduced density gradients (1997) J. Phys. Chem, 101, pp. 7818-7825
Zhao, Y., Schultz, N.E., Truhlar, D.G., Design of density functionals by combining the method of constraint satisfaction with parametrization for thermochemistry, thermochemical kinetics and noncovalent interactions (2006) J. Chem. Theory Comput, 2, pp. 364-382
Bann, J. G., Bachinger, H. P., Glycosylation/hydroxylationinduced stabilization of the collagen triple helix. 4-trans-hydroxyproline in the Xaa position can stabilize the triple helix (2000) J. Biol. Chem, 275, pp. 24466-24469
Berman, H. M., Bhat, T. N., Bourne, P. E., Feng, Z., Gilliland, G., Weissig, H., Westbrook, J., The Protein Data Bank and the challenge of structural genomics (2000) Nat. Struct. Biol, 7 (SUPPL.), pp. 957-959
Besler, B. H., Merz, K. M., Kollman, P. A., Atomic charges derived from semiempirical methods (1990) J. Comput. Chem, 11, pp. 431-439
Boys, S. F., Bernardi, F., The calculation of small molecular interactions by the differences of separate total energies. Some procedures with reduced errors (1970) Mol. Phys, 19, pp. 553-566
Burjanadze, T. V., New analysis of the phylogenetic change of collagen thermostability (2000) Biopolymers, 53, pp. 523-528
Ernzerhof, M. S., Scuseria, G. E., Assessment of the Perdew-Burke-Ernzerhof exchange-correlation functional (1999) J. Chem. Phys, 110, pp. 5029-5036
Foster, J. P., Weinhold, F., Natural hybrid orbitals (1980) J. Am. Chem. Soc, 102, pp. 7211-7218
Frisch, M. J., Trucks, G. W., Schlegel, H. B., Scuseria, G. E., Robb, M. A., Cheeseman, J. R., Montgomery, J. J. A., Burant, J. C., (2003) Gaussian 03, Revision B. 05, , Gaussian, Inc, Pittsburgh, PA
Hodges, J. A., Raines, R. T., Stereoelectronic and steric effects in the collagen triple helix: Toward a code for strand association (2005) J. Am. Chem. Soc, 127, pp. 15923-15932
Holmgren, S. K., Taylor, K. M., Bretscher, L. E., Raines, R. T., Code for collagen's stability deciphered (1998) Nature, 392, pp. 666-667
Holmgren, S. K., Bretscher, L. E., Taylor, K. M., Raines, R. T., A hyperstable collagen mimic (1999) Chem. Biol, 6, pp. 63-70
Jenkins, C. L., Raines, R. T., Insights on the conformational stability of collagen (2002) Nat. Prod. Rep, 19, pp. 49-59
Persikov, A. V., Ramshaw, J. A., Kirkpatrick, A., Brodsky, B., Amino acid propensities for the collagen triple-helix (2000) Biochemistry, 39, pp. 14960-14967
Rucker, A. L., Pager, C. T., Campbell, M. N., Qualls, J. E., Creamer, T. P., Host-guest scale of left-handed polyproline II helix formation (2003) Proteins, 53, pp. 68-75
Tsuzuki, S., L thi, H. P., Interaction energies of van der Waals and hydrogen bonded systems calculated using density functional theory: Assessing the PW91 model (2001) J. Chem. Phys, 114, pp. 3949-3957
Wesolowski, T. A., Parisel, O., Ellinger, Y., Weber, J., Comparative study of benzene X (X = O2, N2, CO) complexes using density functional theory: The importance of an accurate exchange-correlation energy density at high reduced density gradients (1997) J. Phys. Chem, 101, pp. 7818-7825
Contribution of dipole-dipole interactions to the stability of the collagen triple helix
Unveiling sequence-stability and structure-stability relationships is a major goal of protein chemistry and structural biology. Despite the enormous efforts devoted, answers to these issues remain elusive. In principle, collagen represents an ideal system for such investigations due to its simplified sequence and regular structure. However, the definition of the molecular basis of collagen triple helix stability has hitherto proved to be a difficult task. Particularly puzzling is the decoding of the mechanism of triple helix stabilization/destabilization induced by imino acids. Although the propensity-based model, which correlates the propensities of the individual imino acids with the structural requirements of the triple helix, is able to explicate most of the experimental data, it is unable to predict the rather high stability of peptides embedding Gly-Hyp-Hyp triplets. Starting from the available X-ray structures of this polypeptide, we carried out an extensive quantum chemistry analysis of the mutual interactions established by hydroxyproline residues located at the X and Y positions of the Gly-X-Y motif. Our data clearly indicate that the opposing rings of these residues establish significant van der Waals and dipole-dipole interactions that play an important role in triple helix stabilization. These findings suggest that triple helix stabilization can be achieved by distinct structural mechanisms. The interplay of these subtle but recurrent effects dictates the overall stability of this widespread structural motif. Published by Cold Spring Harbor Laboratory Press. Copyright © 2008 The Protein Society.
Unveiling sequence-stability and structure-stability relationships is a major goal of protein chemistry and structural biology. Despite the enormous efforts devoted, answers to these issues remain elusive. In principle, collagen represents an ideal system for such investigations due to its simplified sequence and regular structure. However, the definition of the molecular basis of collagen triple helix stability has hitherto proved to be a difficult task. Particularly puzzling is the decoding of the mechanism of triple helix stabilization/destabilization induced by imino acids. Although the propensity-based model, which correlates the propensities of the individual imino acids with the structural requirements of the triple helix, is able to explicate most of the experimental data, it is unable to predict the rather high stability of peptides embedding Gly-Hyp-Hyp triplets. Starting from the available X-ray structures of this polypeptide, we carried out an extensive quantum chemistry analysis of the mutual interactions established by hydroxyproline residues located at the X and Y positions of the Gly-X-Y motif. Our data clearly indicate that the opposing rings of these residues establish significant van der Waals and dipole-dipole interactions that play an important role in triple helix stabilization. These findings suggest that triple helix stabilization can be achieved by distinct structural mechanisms. The interplay of these subtle but recurrent effects dictates the overall stability of this widespread structural motif. Published by Cold Spring Harbor Laboratory Press. Copyright © 2008 The Protein Society.
Contribution of dipole-dipole interactions to the stability of the collagen triple helix
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Contribution of dipole-dipole interactions to the stability of the collagen triple helix
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Pepino AJ, Segarra-marti J, Nenov A, Improta R, Garavelli M
* Resolving Ultrafast Photoinduced Deactivations in Water-Solvated Pyrimidine Nucleosides (294 views)
J Phys Chem Lett (ISSN: 1948-7185, 1948-7185electronic, 1948-7185linking), 2017 Apr 20; 8(8): 1777-1783.
Impact Factor: 8.709
View Export to BibTeX Export to EndNote
Vayá I, Brazard J, Huix-rotllant M, Thazhathveetil AK, Lewis FD, Gustavsson T, Burghardt I, Improta R, Markovitsi D
* High-Energy Long-Lived Mixed Frenkel-Charge-Transfer Excitons: From Double Stranded (AT)n to Natural DNA (299 views)
Chemistry (ISSN: 0947-6539, 1521-3765, 1521-3765electronic), 2016; 22(14): 4904-4914.
Impact Factor: 5.317
View Export to BibTeX Export to EndNote
Huix-Rotllant M, Brazard J, Improta R, Burghardt I, Markovitsi D
* Stabilization of mixed frenkel-charge transfer excitons extended across both strands of guanine-cytosine DNA duplexes (379 views)
J Phys Chem Lett (ISSN: 1948-7185, 1948-7185electronic, 1948-7185linking), 2015; 6(12): 2247-2251.
Impact Factor: 8.539
View Export to BibTeX Export to EndNote
Changenet-Barret P, Gustavsson T, Improta R, Markovitsi D
* Ultrafast Excited-State Deactivation of 8-Hydroxy-2′-deoxyguanosine Studied by Femtosecond Fluorescence Spectroscopy and Quantum-Chemical Calculations (441 views)
J Phys Chem A (ISSN: 1089-5639, 1520-5215electronic), 2015; 119(23): 6131-6139.
Impact Factor: 2.883
View Export to BibTeX Export to EndNote
Improta R, Ferrer FJ, Stendardo E, Santoro F
* Quantum-classical calculation of the absorption and emission spectral shapes of oligothiophenes at low and room temperature by first-principle calculations (264 views)
Chemphyschem (ISSN: 1439-4235, 1439-7641, 1439-4235linking), 2014 Oct 20; 15(15): 3320-3333.
Impact Factor: 3.419
View Export to BibTeX Export to EndNote
Scognamiglio PL, Di Natale C, Leone M, Poletto M, Vitagliano L, Tell G, Marasco D
* G-quadruplex DNA recognition by nucleophosmin: new insights from protein dissection (440 views)
Bba-Gen Subjects (ISSN: 0005-2728, 0006-3002print, 1570-9639print), 2014 Jun; 1840(6): 2050-2059.
Impact Factor: 5.353
View Export to BibTeX Export to EndNote
Hunger K, Buschhaus L, Biemann L, Braun M, Kovalenko S, Improta R, Kleinermanns K
* UV-light-induced hydrogen transfer in guanosine-guanosine aggregates (421 views)
Chemistry (ISSN: 0947-6539, 1521-3765, 1521-3765electronic), 2013 Apr; 19(17): 5425-5431.
Impact Factor: 5.696
View Export to BibTeX Export to EndNote
Esposito L, Balasco N, De Simone A, Berisio R, Vitagliano L
* Interplay between peptide bond geometrical parameters in nonglobular structural contexts (463 views)
Biomed Res Int (ISSN: 2314-6133, 2314-6141, 2314-6141electronic), 2013; 2013: N/D-N/D.
Impact Factor: 2.13
View Export to BibTeX Export to EndNote
Berisio R
* Learning from pathogens: Exploiting host-pathogen liaison for therapeutic development (493 views)
Curr Protein Pept Sci (ISSN: 1389-2037, 1389-2037linking), 2012 Dec; 13(8): 697-698.
Impact Factor: 2.326
View Export to BibTeX Export to EndNote
Berisio R, Vitagliano L
* Polyproline and triple helix motifs in Host-Pathogen recognition (764 views)
Curr Protein Pept Sci (ISSN: 1389-2037, 1389-2037linking), 2012 Dec; 13(8): 855-865.
Impact Factor: 2.326
View Export to BibTeX Export to EndNote
Banyasz A, Karpati S, Mercier Y, Reguero M, Gustavsson T, Markovitsi D, Improta R
* The peculiar spectral properties of amino-substituted uracils: A combined theoretical and experimental study (350 views)
J Phys Chem B (ISSN: 1520-6106, 1520-5207, 1520-5207electronic), 2010 Oct 7; 114(39): 12708-12719.
Impact Factor: 3.603
View Export to BibTeX Export to EndNote
Gustavsson T, Improta R, Markovitsi D
DNA/RNA: Building blocks of life under UV irradiation (258 views)
J Phys Chem Lett (ISSN: 1948-7185, 1948-7185electronic, 1948-7185linking), 2010 Jul 1; 1(13): 2025-2030.
Impact Factor: 6.687
View Export to BibTeX Export to EndNote
Improta R, Barone V, Lami A, Santoro F
* Quantum dynamics of the ultrafast ππ*/nπ* population transfer in uracil and 5-fluoro-uracil in water and acetonitrile (289 views)
J Phys Chem B (ISSN: 1520-6106, 1520-5207, 1520-5207electronic), 2009 Oct 29; 113(43): 14491-14503.
Impact Factor: 3.471
View Export to BibTeX Export to EndNote
Berisio R, De Simone A, Ruggiero A, Improta R, Vitagliano L
* Role of side chains in collagen triple helix stabilization and partner recognition (671 views)
J Pept Sci (ISSN: 1075-2617, 1099-1387, 1075-2617print), 2009 Mar; 15(3): 131-140.
Impact Factor: 1.807
View Export to BibTeX Export to EndNote
Ruggiero A, Tizzano B, Pedone E, Pedone C, Wilmanns M, Berisio R
* Crystal Structure of the Resuscitation-Promoting Factor (Delta DUF)RpfB from M. tuberculosis (571 views)
J Mol Biol (ISSN: 0022-2836, 1089-8638, 1089-8638electronic), 2009 Jan 9; 385(1): 153-162.
Impact Factor: 3.871
View Export to BibTeX Export to EndNote
Vergara A, Castagnolo D, Carotenuto L, Vitagliano L, Berisio R, Sorrentino G, Gonzalez-ramirez L, Garcia-ruiz J, Zagari A
* Phase behavior and crystallogenesis under counter-diffusion conditions of the collagen-model peptide (Pro-Pro-Gly)10 (399 views)
J Cryst Growth (ISSN: 0022-0248), 2009 Jan 1; 311(2): 304-309.
Impact Factor: 1.534
View Export to BibTeX Export to EndNote
Karunakaran V, Kleinermanns K, Improta R, Kovalenko SA
* Photoinduced dynamics of guanosine monophosphate in water from broad-band transient absorption spectroscopy and quantum-chemical calculations (278 views)
J Am Chem Soc (ISSN: 0002-7863, 0002-2786, 1520-5126), 2009; 131(16): 5839-5850.
Impact Factor: 8.58
View Export to BibTeX Export to EndNote
Milardi D, Pappalardo M, Pannuzzo M, Grasso DM, Rosa CL
* The role of the Cys2-Cys7 disulfide bridge in the early steps of Islet amyloid polypeptide aggregation: A molecular dynamics study (446 views)
Chem Phys Lett (ISSN: 0009-2614), 2008 Oct 1; 463(4-6): 396-399.
Impact Factor: 2.169
View Export to BibTeX Export to EndNote
De Simone A, Vitagliano L, Berisio R
* Role of hydration in collagen triple helix stabilization (379 views)
Biochem Biophys Res Commun (ISSN: 0006-291x), 2008 Jul 18; 372(1): 121-125.
Impact Factor: 2.648
View Export to BibTeX Export to EndNote
Staiano M, Saviano M, Herman P, Grycznyski Z, Fini C, Varriale A, Parracino A, Kold AB, Rossi M, D'Auria S
* Time-resolved fluorescence spectroscopy and molecular dynamics simulations point out the effects of pressure on the stability and dynamics of the porcine odorant-binding protein (608 views)
Biopolymers (ISSN: 0006-3525, 0006-6352, 0006-3525print), 2008; 89(4): 284-291.
Impact Factor: 2.823
View Export to BibTeX Export to EndNote
Salvatore A, Cigliano L, Bucci EM, Corpillo D, Velasco S, Carlucci A, Pedone C, Abrescia P
* Haptoglobin binding to apolipoprotein A-I prevents damage from hydroxyl radicals on its stimulatory activity of the enzyme lecithin-cholesterol acyl-transferase (407 views)
Biochemistry (ISSN: 0006-2960, 1520-4995, 1520-4995electronic), 2007 Oct 2; 46(39): 11158-11168.
Impact Factor: 3.368
View Export to BibTeX Export to EndNote
Gustavsson T, Sarkar N, Lazzarotto E, Markovitsi D, Barone V, Improta R
* Solvent effect on the singlet excited-state dynamics of 5-fluorouracil in acetonitrile as compared with water (314 views)
J Phys Chem B (ISSN: 1520-6106, 1520-5207, 1520-5207electronic), 2006 Jul 6; 110(26): 12843-12847.
Impact Factor: 4.115
View Export to BibTeX Export to EndNote
Berisio R, Granata V, Vitagliano L, Zagari A
* Imino acids and collagen triple helix stability: Characterization of collagen-like polypeptides containing Hyp-Hyp-Gly sequence repeats (437 views)
J Am Chem Soc (ISSN: 0002-7863, 0002-2786, 1520-5126), 2004 Sep 22; 126(37): 11402-11403.
Impact Factor: 6.903
View Export to BibTeX Export to EndNote
Berisio R, Granata V, Vitagliano L, Zagari A
* Characterization of Collagen-Like Heterotrimers: Implications for Triple-Helix Stability (416 views)
Biopolymers (ISSN: 0006-3525, 0006-6352, 0006-3525print), 2004 Apr 15; 73(6): 682-688.
Impact Factor: 2.863
View Export to BibTeX Export to EndNote
Berisio R, Vitagliano L, Vergara A, Sorrentino G, Mazzarella L, Zagari A
* Crystallization of the collagen-like polypeptide (PPG)10 aboard the International Space Station. 2. Comparison of crystal quality by X-ray diffraction (517 views)
Acta Crystallogr D Biol Crystallogr (ISSN: 0907-4449, 0907-4449linking), 2002 Oct; 58(10II): 1695-1699.
Impact Factor: 1.76
View Export to BibTeX Export to EndNote
Berisio R, Vitagliano L, Mazzarella L, Zagari A
* Recent progress on collagen triple helix structure, stability and assembly (433 views)
Protein Pept Lett (ISSN: 0929-8665, 1875-5305), 2002 Apr; 9(2): 107-116.
Impact Factor: 0.622
View Export to BibTeX Export to EndNote
Berisio R, Vitagliano L, Mazzarella L, Zagari A
* Crystal structure of the collagen triple helix model [(Pro-Pro-Gly)10]3 (521 views)
Protein Sci (ISSN: 0961-8368, 1469-896xelectronic), 2002 Feb; 11(2): 262-270.
Impact Factor: 3.546
View Export to BibTeX Export to EndNote
Benzi C, Improta R, Scalmani G, Barone V
* Quantum mechanical study of the conformational behavior of proline and 4R-hydroxyproline dipeptide analogues in vacuum and in aqueous solution (304 views)
J Comput Chem (ISSN: 0192-8651, 1096-987xelectronic), 2002 Feb; 23(3): 341-350.
Impact Factor: 2.931
View Export to BibTeX Export to EndNote
Vitagliano L, Berisio R, Mastrangelo A, Mazzarella L, Zagari A
* Preferred proline puckerings in cis and trans peptide groups: Implications for collagen stability (644 views)
Protein Sci (ISSN: 0961-8368, 1469-896xelectronic), 2001 Dec; 10(12): 2627-2632.
Impact Factor: 3.472
View Export to BibTeX Export to EndNote
Vitagliano L, Berisio R, Mazzarella L, Zagari A
* Structural bases of collagen stabilization induced by proline hydroxylation (706 views)
Biopolymers (ISSN: 0006-3525, 0006-6352, 0006-3525print), 2001 Apr 15; 58(5): 459-464.
Impact Factor: 1.845
View Export to BibTeX Export to EndNote
Berisio R, Vitagliano L, Mazzarella L, Zagari A
Crystal Structure Of A Collagen-Like Polypeptide With Repeating Sequence Pro-Hyp-Gly At 1. 4 Ang Resolution: Implications For Collagen Hydration (436 views)
Biopolymers (ISSN: 0006-3525, 0006-6352, 0006-3525print), 2000; 56(1): 8-13.
Impact Factor: 2.405
View Export to BibTeX Export to EndNote
Kramer RZ, Vitagliano L, Bella J, Berisio R, Mazzarella L, Brodsky B, Zagari A, Berman HM
X-ray crystallographic determination of a collagen-like peptide with the repeating sequence (Pro-Pro-Gly) (444 views)
J Mol Biol (ISSN: 0022-2836, 1089-8638, 1089-8638electronic), 1998 Jul 24; 280(4): 623-638.
Impact Factor: 5.803
View Export to BibTeX Export to EndNote
Pavone V, Rossi F, Pucci P, Andini S, Ferrara L, Di Blasio B, Pedone C
Studies on gliadin related peptides. I. Synthesis, purification and 1H n. m. r. characterization of the pentapeptide H-Tyr-(Gln)3-Pro-OH (1025 views)
Int J Pept Protein Res (ISSN: 0367-8377, 0367-8377print), 1983 Oct; 22(4): 482-488.
Impact Factor: 1.255
View Export to BibTeX Export to EndNote
* Resolving Ultrafast Photoinduced Deactivations in Water-Solvated Pyrimidine Nucleosides (294 views)
J Phys Chem Lett (ISSN: 1948-7185, 1948-7185electronic, 1948-7185linking), 2017 Apr 20; 8(8): 1777-1783.
Impact Factor: 8.709
View Export to BibTeX Export to EndNote
Vayá I, Brazard J, Huix-rotllant M, Thazhathveetil AK, Lewis FD, Gustavsson T, Burghardt I, Improta R, Markovitsi D
* High-Energy Long-Lived Mixed Frenkel-Charge-Transfer Excitons: From Double Stranded (AT)n to Natural DNA (299 views)
Chemistry (ISSN: 0947-6539, 1521-3765, 1521-3765electronic), 2016; 22(14): 4904-4914.
Impact Factor: 5.317
View Export to BibTeX Export to EndNote
Huix-Rotllant M, Brazard J, Improta R, Burghardt I, Markovitsi D
* Stabilization of mixed frenkel-charge transfer excitons extended across both strands of guanine-cytosine DNA duplexes (379 views)
J Phys Chem Lett (ISSN: 1948-7185, 1948-7185electronic, 1948-7185linking), 2015; 6(12): 2247-2251.
Impact Factor: 8.539
View Export to BibTeX Export to EndNote
Changenet-Barret P, Gustavsson T, Improta R, Markovitsi D
* Ultrafast Excited-State Deactivation of 8-Hydroxy-2′-deoxyguanosine Studied by Femtosecond Fluorescence Spectroscopy and Quantum-Chemical Calculations (441 views)
J Phys Chem A (ISSN: 1089-5639, 1520-5215electronic), 2015; 119(23): 6131-6139.
Impact Factor: 2.883
View Export to BibTeX Export to EndNote
Improta R, Ferrer FJ, Stendardo E, Santoro F
* Quantum-classical calculation of the absorption and emission spectral shapes of oligothiophenes at low and room temperature by first-principle calculations (264 views)
Chemphyschem (ISSN: 1439-4235, 1439-7641, 1439-4235linking), 2014 Oct 20; 15(15): 3320-3333.
Impact Factor: 3.419
View Export to BibTeX Export to EndNote
Scognamiglio PL, Di Natale C, Leone M, Poletto M, Vitagliano L, Tell G, Marasco D
* G-quadruplex DNA recognition by nucleophosmin: new insights from protein dissection (440 views)
Bba-Gen Subjects (ISSN: 0005-2728, 0006-3002print, 1570-9639print), 2014 Jun; 1840(6): 2050-2059.
Impact Factor: 5.353
View Export to BibTeX Export to EndNote
Hunger K, Buschhaus L, Biemann L, Braun M, Kovalenko S, Improta R, Kleinermanns K
* UV-light-induced hydrogen transfer in guanosine-guanosine aggregates (421 views)
Chemistry (ISSN: 0947-6539, 1521-3765, 1521-3765electronic), 2013 Apr; 19(17): 5425-5431.
Impact Factor: 5.696
View Export to BibTeX Export to EndNote
Esposito L, Balasco N, De Simone A, Berisio R, Vitagliano L
* Interplay between peptide bond geometrical parameters in nonglobular structural contexts (463 views)
Biomed Res Int (ISSN: 2314-6133, 2314-6141, 2314-6141electronic), 2013; 2013: N/D-N/D.
Impact Factor: 2.13
View Export to BibTeX Export to EndNote
Berisio R
* Learning from pathogens: Exploiting host-pathogen liaison for therapeutic development (493 views)
Curr Protein Pept Sci (ISSN: 1389-2037, 1389-2037linking), 2012 Dec; 13(8): 697-698.
Impact Factor: 2.326
View Export to BibTeX Export to EndNote
Berisio R, Vitagliano L
* Polyproline and triple helix motifs in Host-Pathogen recognition (764 views)
Curr Protein Pept Sci (ISSN: 1389-2037, 1389-2037linking), 2012 Dec; 13(8): 855-865.
Impact Factor: 2.326
View Export to BibTeX Export to EndNote
Banyasz A, Karpati S, Mercier Y, Reguero M, Gustavsson T, Markovitsi D, Improta R
* The peculiar spectral properties of amino-substituted uracils: A combined theoretical and experimental study (350 views)
J Phys Chem B (ISSN: 1520-6106, 1520-5207, 1520-5207electronic), 2010 Oct 7; 114(39): 12708-12719.
Impact Factor: 3.603
View Export to BibTeX Export to EndNote
Gustavsson T, Improta R, Markovitsi D
DNA/RNA: Building blocks of life under UV irradiation (258 views)
J Phys Chem Lett (ISSN: 1948-7185, 1948-7185electronic, 1948-7185linking), 2010 Jul 1; 1(13): 2025-2030.
Impact Factor: 6.687
View Export to BibTeX Export to EndNote
Improta R, Barone V, Lami A, Santoro F
* Quantum dynamics of the ultrafast ππ*/nπ* population transfer in uracil and 5-fluoro-uracil in water and acetonitrile (289 views)
J Phys Chem B (ISSN: 1520-6106, 1520-5207, 1520-5207electronic), 2009 Oct 29; 113(43): 14491-14503.
Impact Factor: 3.471
View Export to BibTeX Export to EndNote
Berisio R, De Simone A, Ruggiero A, Improta R, Vitagliano L
* Role of side chains in collagen triple helix stabilization and partner recognition (671 views)
J Pept Sci (ISSN: 1075-2617, 1099-1387, 1075-2617print), 2009 Mar; 15(3): 131-140.
Impact Factor: 1.807
View Export to BibTeX Export to EndNote
Ruggiero A, Tizzano B, Pedone E, Pedone C, Wilmanns M, Berisio R
* Crystal Structure of the Resuscitation-Promoting Factor (Delta DUF)RpfB from M. tuberculosis (571 views)
J Mol Biol (ISSN: 0022-2836, 1089-8638, 1089-8638electronic), 2009 Jan 9; 385(1): 153-162.
Impact Factor: 3.871
View Export to BibTeX Export to EndNote
Vergara A, Castagnolo D, Carotenuto L, Vitagliano L, Berisio R, Sorrentino G, Gonzalez-ramirez L, Garcia-ruiz J, Zagari A
* Phase behavior and crystallogenesis under counter-diffusion conditions of the collagen-model peptide (Pro-Pro-Gly)10 (399 views)
J Cryst Growth (ISSN: 0022-0248), 2009 Jan 1; 311(2): 304-309.
Impact Factor: 1.534
View Export to BibTeX Export to EndNote
Karunakaran V, Kleinermanns K, Improta R, Kovalenko SA
* Photoinduced dynamics of guanosine monophosphate in water from broad-band transient absorption spectroscopy and quantum-chemical calculations (278 views)
J Am Chem Soc (ISSN: 0002-7863, 0002-2786, 1520-5126), 2009; 131(16): 5839-5850.
Impact Factor: 8.58
View Export to BibTeX Export to EndNote
Milardi D, Pappalardo M, Pannuzzo M, Grasso DM, Rosa CL
* The role of the Cys2-Cys7 disulfide bridge in the early steps of Islet amyloid polypeptide aggregation: A molecular dynamics study (446 views)
Chem Phys Lett (ISSN: 0009-2614), 2008 Oct 1; 463(4-6): 396-399.
Impact Factor: 2.169
View Export to BibTeX Export to EndNote
De Simone A, Vitagliano L, Berisio R
* Role of hydration in collagen triple helix stabilization (379 views)
Biochem Biophys Res Commun (ISSN: 0006-291x), 2008 Jul 18; 372(1): 121-125.
Impact Factor: 2.648
View Export to BibTeX Export to EndNote
Staiano M, Saviano M, Herman P, Grycznyski Z, Fini C, Varriale A, Parracino A, Kold AB, Rossi M, D'Auria S
* Time-resolved fluorescence spectroscopy and molecular dynamics simulations point out the effects of pressure on the stability and dynamics of the porcine odorant-binding protein (608 views)
Biopolymers (ISSN: 0006-3525, 0006-6352, 0006-3525print), 2008; 89(4): 284-291.
Impact Factor: 2.823
View Export to BibTeX Export to EndNote
Salvatore A, Cigliano L, Bucci EM, Corpillo D, Velasco S, Carlucci A, Pedone C, Abrescia P
* Haptoglobin binding to apolipoprotein A-I prevents damage from hydroxyl radicals on its stimulatory activity of the enzyme lecithin-cholesterol acyl-transferase (407 views)
Biochemistry (ISSN: 0006-2960, 1520-4995, 1520-4995electronic), 2007 Oct 2; 46(39): 11158-11168.
Impact Factor: 3.368
View Export to BibTeX Export to EndNote
Gustavsson T, Sarkar N, Lazzarotto E, Markovitsi D, Barone V, Improta R
* Solvent effect on the singlet excited-state dynamics of 5-fluorouracil in acetonitrile as compared with water (314 views)
J Phys Chem B (ISSN: 1520-6106, 1520-5207, 1520-5207electronic), 2006 Jul 6; 110(26): 12843-12847.
Impact Factor: 4.115
View Export to BibTeX Export to EndNote
Berisio R, Granata V, Vitagliano L, Zagari A
* Imino acids and collagen triple helix stability: Characterization of collagen-like polypeptides containing Hyp-Hyp-Gly sequence repeats (437 views)
J Am Chem Soc (ISSN: 0002-7863, 0002-2786, 1520-5126), 2004 Sep 22; 126(37): 11402-11403.
Impact Factor: 6.903
View Export to BibTeX Export to EndNote
Berisio R, Granata V, Vitagliano L, Zagari A
* Characterization of Collagen-Like Heterotrimers: Implications for Triple-Helix Stability (416 views)
Biopolymers (ISSN: 0006-3525, 0006-6352, 0006-3525print), 2004 Apr 15; 73(6): 682-688.
Impact Factor: 2.863
View Export to BibTeX Export to EndNote
Berisio R, Vitagliano L, Vergara A, Sorrentino G, Mazzarella L, Zagari A
* Crystallization of the collagen-like polypeptide (PPG)10 aboard the International Space Station. 2. Comparison of crystal quality by X-ray diffraction (517 views)
Acta Crystallogr D Biol Crystallogr (ISSN: 0907-4449, 0907-4449linking), 2002 Oct; 58(10II): 1695-1699.
Impact Factor: 1.76
View Export to BibTeX Export to EndNote
Berisio R, Vitagliano L, Mazzarella L, Zagari A
* Recent progress on collagen triple helix structure, stability and assembly (433 views)
Protein Pept Lett (ISSN: 0929-8665, 1875-5305), 2002 Apr; 9(2): 107-116.
Impact Factor: 0.622
View Export to BibTeX Export to EndNote
Berisio R, Vitagliano L, Mazzarella L, Zagari A
* Crystal structure of the collagen triple helix model [(Pro-Pro-Gly)10]3 (521 views)
Protein Sci (ISSN: 0961-8368, 1469-896xelectronic), 2002 Feb; 11(2): 262-270.
Impact Factor: 3.546
View Export to BibTeX Export to EndNote
Benzi C, Improta R, Scalmani G, Barone V
* Quantum mechanical study of the conformational behavior of proline and 4R-hydroxyproline dipeptide analogues in vacuum and in aqueous solution (304 views)
J Comput Chem (ISSN: 0192-8651, 1096-987xelectronic), 2002 Feb; 23(3): 341-350.
Impact Factor: 2.931
View Export to BibTeX Export to EndNote
Vitagliano L, Berisio R, Mastrangelo A, Mazzarella L, Zagari A
* Preferred proline puckerings in cis and trans peptide groups: Implications for collagen stability (644 views)
Protein Sci (ISSN: 0961-8368, 1469-896xelectronic), 2001 Dec; 10(12): 2627-2632.
Impact Factor: 3.472
View Export to BibTeX Export to EndNote
Vitagliano L, Berisio R, Mazzarella L, Zagari A
* Structural bases of collagen stabilization induced by proline hydroxylation (706 views)
Biopolymers (ISSN: 0006-3525, 0006-6352, 0006-3525print), 2001 Apr 15; 58(5): 459-464.
Impact Factor: 1.845
View Export to BibTeX Export to EndNote
Berisio R, Vitagliano L, Mazzarella L, Zagari A
Crystal Structure Of A Collagen-Like Polypeptide With Repeating Sequence Pro-Hyp-Gly At 1. 4 Ang Resolution: Implications For Collagen Hydration (436 views)
Biopolymers (ISSN: 0006-3525, 0006-6352, 0006-3525print), 2000; 56(1): 8-13.
Impact Factor: 2.405
View Export to BibTeX Export to EndNote
Kramer RZ, Vitagliano L, Bella J, Berisio R, Mazzarella L, Brodsky B, Zagari A, Berman HM
X-ray crystallographic determination of a collagen-like peptide with the repeating sequence (Pro-Pro-Gly) (444 views)
J Mol Biol (ISSN: 0022-2836, 1089-8638, 1089-8638electronic), 1998 Jul 24; 280(4): 623-638.
Impact Factor: 5.803
View Export to BibTeX Export to EndNote
Pavone V, Rossi F, Pucci P, Andini S, Ferrara L, Di Blasio B, Pedone C
Studies on gliadin related peptides. I. Synthesis, purification and 1H n. m. r. characterization of the pentapeptide H-Tyr-(Gln)3-Pro-OH (1025 views)
Int J Pept Protein Res (ISSN: 0367-8377, 0367-8377print), 1983 Oct; 22(4): 482-488.
Impact Factor: 1.255
View Export to BibTeX Export to EndNote
33 Records (33 excluding Abstracts).
Total impact factor: 124.779 (124.779 excluding Abstracts).
Total 5 year impact factor: 139.506 (139.506 excluding Abstracts).
Total impact factor: 124.779 (124.779 excluding Abstracts).
Total 5 year impact factor: 139.506 (139.506 excluding Abstracts).
405 views. Last view on Sunday 29 January 2023, 1:36:18
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