Molecular modeling and functional characterization of the monomeric primase-polymerase domain from the Sulfolobus solfataricus plasmid pIT3(398 views) Prato S, Vitale RM, Contursi P, Lipps G, Saviano M, Rossi M, Bartolucci S
Keywords: Dna Replication, Pit3 Plasmid, Primase-Polymerase Domain, Sulfolobus, Terminal Transferase, Bacterial Enzyme, Deoxyribonucleotide, Divalent Cation, Nucleic Acid, Nucleotidyltransferase, Oligonucleotide, Article, Bacterial Strain, Biochemistry, Comparative Study, Controlled Study, Crystallography, Dna Synthesis, Enzyme Activity, Enzyme Structure, Escherichia Coli, Knowledge, Molecular Dynamics, Molecular Model, Nonhuman, Nucleic Acid Synthesis, Priority Journal, Protein Domain, Protein Expression, Protein Purification, Rna Synthesis, Sequence Analysis, Structure Analysis, Sulfolobus Solfataricus, Temperature, Amino Acid Sequence, Base Sequence, Dna Primase, Dna Primers, Dna-Directed Dna Polymerase, Molecular Sequence Data, Sequence Homology, Archaea, Crenarchaeota,
Affiliations: *** IBB - CNR ***
Dipartimento di Biologia Strutturale e Funzionale, Università degli Studi di Napoli Federico II, Complesso Universitario di Monte S. Angelo, Via Cinthia, 80126, Naples, Italy
Istituto di Chimica Biomolecolare, CNR, Pozzuoli, Naples, Italy
Institute of Biochemistry, University of Bayreuth, Germany
Istituto di Biostrutture e Bioimmagini, CNR, Naples, Italy
Istituto di Biochimica Delle Proteine, CNR, Naples, Italy
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Thompson, J. D., Higgins, D. G., Gibson, T. J., CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice (1994) Nucleic Acids Res, 22, pp. 4673-4680
Laskowski, R. A., MacArthur, M. W., Moss, D. S., Thornton, J. M., PROCHECK: A program to check the stereochemical quality of protein structures (1993) J Appl Crystallogr, 26, pp. 283-291
Case, D. A., Darden, T. A., Cheatham, T. E., Simmerling, C. L., Wang, J., Duke, R. E., Luo, R., Pearlman, D. A., (2004) AMBER 8., , University of California, San Francisco
Ryckaert, J. -P., Ciccotti, G., Berendsen, H. J. C., Numerical integration of the Cartesian equations of motion of a system with constraints: Molecular dynamics of n-alkanes (1977) J Computat Phys, 23, pp. 327-341
Molecular modeling and functional characterization of the monomeric primase-polymerase domain from the Sulfolobus solfataricus plasmid pIT3