Determination of the conformation of the human VDAC1 N-terminal peptide, a protein moiety essential for the functional properties of the pore(540 views) De Pinto V, Tomasello F, Messina A, Guarino F, Benz R, La Mendola D, Magrì A, Milardi D, Pappalardo G
Chembiochem (ISSN: 1439-4227, 1439-7633, 1439-7633electronic), 2007 May 7; 8(7): 744-756.
Keywords: Apoptosis, Calorimetry, Circular Dichroism, Ion Channels, Nmr Spectroscopy, 2 Dipalmitoyl Glycero 3 Phosphoserine, Acetylalanylvalylprolylprolylthreonyltyrosylalanylaspartylleucylglycyllysylserylalanylarginylaspartylvalylphenylalanylthreonyllysylamide, Mutant Protein, Porin, Trifluoroethanol, Tyrosine, Unclassified Drug, Valine, Voltage Dependent Anion Channel, Primer Dna, Vdac1 Protein, Human, Alpha Helix, Amino Acid Sequence, Amino Terminal Sequence, Animal Cell, Article, Artificial Membrane, Cell Strain Cos1, Conformational Transition, Controlled Study, Deletion Mutant, Depolarization, Differential Scanning Calorimetry, Electricity, Eukaryotic Cell, Genetic Transfection, Human Cell, Mitochondrion, Nonhuman, Nuclear Magnetic Resonance Spectroscopy, Priority Journal, Protein Conformation, Protein Determination, Protein Expression, Protein Function, Protein Interaction, Protein Secondary Structure, Protein Structure, Cell Line, Chemistry, Molecular Genetics, Nucleotide Sequence, Physiology, Spectrofluorometry, Base Sequence, Dna Primers, Molecular Sequence Data, Spectrometry, Fluorescence, Voltage-Dependent Anion Channel 1,
Affiliations: *** IBB - CNR ***
Department of Chemical Sciences, Laboratory of Molecular Biology, University of Catania, Viale A. Doha, 6, 95125 Catania, Italy
Department of Biotechnology Biozentrum am Hubland, University of Wurzburg, Am Hubland, 97074, Germany
Istituto Biostrutture e Bioimmagini, Consiglio Nazionale Delle Ricerche, Viale A. Doria, 6, 95125 Catania, Italy
References: Colombini, M., (1989) J. Membr. Biol, 111, pp. 103-11
Benz, R., (1994) Biochim. Biophys. Acta, 1197, pp. 167-196
Blachly-Dyson, E., Forte, M., (2001) IUBMB Life, 52, pp. 113-118
Shoshan-Barmatz, V., Gincel, D., (2003) Cell Biochem. Biophys, 39, pp. 279-292
De Pinto, V., Ludwig, O., Krause, J., Benz, R., Palmieri, F., (1987) Biochim. Biophys. Acta, 894, pp. 109-119
Sampson, M.J., Lovell, R.S., Craigen, W.J., (1997) J. Biol. Chem, 272, pp. 18 966-18 973
Messina, A., Oliva, M., Rosato, C., Huizing, M., Ruitenbeek, W., van den Heuvel, L.P., Forte, M., De Pinto, V., (1999) Biochem. Biophys. Res. Commun, 255, pp. 707-710
Rahmani, Z., Maunoury, C., Siddiqui, A., (1998) Eur. J. Hum. Genet, 6, pp. 337-340
Ardail, D., Privat, J.P., Egret-Charlier, M., Levrat, C., Lerme, F., Louisot, P., (1990) J. Biol. Chem, 265, pp. 18 797-18 802
Wilson, J.E., (2003) J. Exp. Biol, 206, pp. 2049-2057
Kallenbach, N.R., Lyu, P.C., Honxing, Z., (1996) Circular Dichroism and the Conformational Analysis of Biomolecules, pp. 201-259. , Ed, G. D. Fasman, Plenum, New York
Holzwarth, G., Doty, P., (1965) J. Am. Chem. Soc, 87, pp. 218-228
Holtzer, M.E., Holtzer, A., (1992) Biopolymers, 32, pp. 1589-1591
Scholtz, J.M., Baldwin, R.L., (1995) Peptides, Synthesis Structures, and Application, pp. 171-192. , Ed, B. Gutte Academic Press, London
Scholtz, J.M., Marqusee, S., Baldwin, R.L., York, E.J., Stewart, J.M., Santoro, M., Bolen, D.W., (1991) Proc. Natl. Acad. Sci. USA, 88, pp. 2854-2858
San Miguel, M., Marrington, R., Rodger, P.M., Rodger, A., Robinson, C., (2003) Eur. J. Biochem, 270, pp. 3345-3352
Wüthrich, K., (1986) NMR of Proteins and Nucleic Acid, , Wiley Interscience, New York
Buchko, G.W., Rozek, A., Zhong, Q., Cushley, R.J., (1995) Pept. Res, 8, pp. 86-94
Henry, G.D., Sykes, B.D., (1994) Methods Enzymol, 239, pp. 515-535
Wishart, D.S., Bigam, C.G., Holm, A., Hodges, R.S., Sykes, B.D., (1995) J. Biomol. NMR, 5, pp. 67-81
Sanderson, J.M., (2005) Org. Biomol. Chem, 3, pp. 201-212
Flory, P.J., (1975) Science, 188, pp. 1268-1276
Grasso, D., Milardi, D., Guantieri, V., La Rosa, C., Rizzarelli, E., (2003) New J. Chem, 27, pp. 359-364
Mizushima, T., Ishikawa, Y., Obana, E., Hase, M., Kubota, T., Katayama, T., Kunitake, T., Sekimizu, K., (1996) J. Biol. Chem, 271, pp. 3633-3638
Zaid, H., Abu-Hamad, S., Israelson, A., Nathan, I., Shoshan-Barmatz, V., (2005) Cell Death Differ, 12, pp. 751-760
Borgese, N., Gazzoni, I., Barberi, M., Colombo, S., Pedrazzinni, E., (2001) Mol. Biol. Cell, 12, pp. 2482-2496
Guo, X.W., Smith, P.R., Cognon, B., D'Arcangelis, D., Dolginova, E., Mannella, C.A., (1995) J. Struct. Biol, 114, pp. 41-59
Brito, R.M., Vaz, W.L., (1986) Anal. Biochem, 152, pp. 250-255
Babel, D., Götz, W., Götz, H., Thinnes, F.P., Jürgeos, L., König, U., Hilschmann, N., (1991) Biol. Chem. Hoppe-Seyler, 372, pp. 1027-1034
Colombini, M., Blachly-Dyson, E., Forte, M., (1996) Ion Channels, 4, pp. 169-202
Liu, M.Y., Colombini, M., (1992) Biochim. Biophys. Acta, 1098, pp. 255-260
Popp, B., Court, D.A., Benz, R., Neupert, W., Lill, R., (1996) J. Biol. Chem, 271, pp. 13 593-13 599
Koppel, D.A., Kinnally, K.W., Masters, P., Forte, M., Blachly-Dyson, E., Mannella, C.A., (1998) J. Biol. Chem, 273, pp. 13 794-13 800
Abrecht, H., Goormaghtigh, E., Ruysschaert, J.M., Homble, F., (2000) J. Biol. Chem, 275, pp. 40 992-40 999
Paschen, S.A., Neupert, W., Rapaport, D., (2005) Trends Biochem. Sci, 30, pp. 575-582
Zalk, R., Israelson, A., Garty, E.S., Azoulay-Zohar, H., Shoshan-Barmatz, V., (2005) Biochem. J, 386, pp. 73-83
Chen, G.C., Yang, J.T., (1977) Anal. Lett, 10, pp. 1195-1207
Luo, P., Baldwin, R.L., (1997) Biochemistry, 36, pp. 8413-8421
Rohl, C.A., Baldwin, R.L., (1997) Biochemistry, 36, pp. 8435-8442
Rance, M., Sorensen, O.W., Bodenhausen, G., Wagner, G., Ernst, R.R., Wuthrich, K., (1983) Biochem. Biophys. Res. Commun, 117, pp. 479-485
Bax, A., Davis, D.G., (1985) J. Magn. Reson, 65, pp. 355-360
Jeener, J., Meier, B.H., Bachmann, P., Ernst, R.R., (1979) J. Chem. Phys, 71, pp. 4546-4553
Demas, J.N., Adamson, A.W., (1973) J. Am. Chem. Soc, 95, pp. 5159-5168
Mannella, C. A., Bonner Jr, W. D., (1975) Biochim. Biophys. Acta, 413, pp. 213-225
Sampson, M. J., Lovell, R. S., Craigen, W. J., (1997) J. Biol. Chem, 272, pp. 18 966-18 973
Wilson, J. E., (2003) J. Exp. Biol, 206, pp. 2049-2057
Pastorino, J. G., Hoek, J. B., (2003) Curr. Med. Chem, 10, pp. 1535-1551
Vander Heiden, M. G., Chandel, N. S., Li, X. X., Schumacker, P. T., Colombini, M., Thompson, C. B., (2000) Proc. Natl. Acad. Sci. USA, 97, pp. 4666-4671
Cheng, E. H., Sheiko, T. V., Fisher, J. K., Craigen, W. J., Korsmeyer, S. J., (2003) Science, 301, pp. 513-517
Guo, X. W., Mannella, C. A., (1993) Biophys. J, 64, pp. 545-549
Schulz, G. E., (1996) Curr. Opin. Struct. Biol, 6, pp. 485-490
Schulz, G. E., (2000) Curr. Opin. Struct. Biol, 10, pp. 443-447
Kallenbach, N. R., Lyu, P. C., Honxing, Z., (1996) Circular Dichroism and the Conformational Analysis of Biomolecules, pp. 201-259. , Ed, G. D. Fasman, Plenum, New York
Holtzer, M. E., Holtzer, A., (1992) Biopolymers, 32, pp. 1589-1591
Scholtz, J. M., Baldwin, R. L., (1995) Peptides, Synthesis Structures, and Application, pp. 171-192. , Ed, B. Gutte Academic Press, London
Scholtz, J. M., Marqusee, S., Baldwin, R. L., York, E. J., Stewart, J. M., Santoro, M., Bolen, D. W., (1991) Proc. Natl. Acad. Sci. USA, 88, pp. 2854-2858
W thrich, K., (1986) NMR of Proteins and Nucleic Acid, , Wiley Interscience, New York
Buchko, G. W., Rozek, A., Zhong, Q., Cushley, R. J., (1995) Pept. Res, 8, pp. 86-94
Henry, G. D., Sykes, B. D., (1994) Methods Enzymol, 239, pp. 515-535
Wishart, D. S., Bigam, C. G., Holm, A., Hodges, R. S., Sykes, B. D., (1995) J. Biomol. NMR, 5, pp. 67-81
Sanderson, J. M., (2005) Org. Biomol. Chem, 3, pp. 201-212
Flory, P. J., (1975) Science, 188, pp. 1268-1276
Guo, X. W., Smith, P. R., Cognon, B., D'Arcangelis, D., Dolginova, E., Mannella, C. A., (1995) J. Struct. Biol, 114, pp. 41-59
Brito, R. M., Vaz, W. L., (1986) Anal. Biochem, 152, pp. 250-255
Babel, D., G tz, W., G tz, H., Thinnes, F. P., J rgeos, L., K nig, U., Hilschmann, N., (1991) Biol. Chem. Hoppe-Seyler, 372, pp. 1027-1034
Liu, M. Y., Colombini, M., (1992) Biochim. Biophys. Acta, 1098, pp. 255-260
Koppel, D. A., Kinnally, K. W., Masters, P., Forte, M., Blachly-Dyson, E., Mannella, C. A., (1998) J. Biol. Chem, 273, pp. 13 794-13 800
Paschen, S. A., Neupert, W., Rapaport, D., (2005) Trends Biochem. Sci, 30, pp. 575-582
Chen, G. C., Yang, J. T., (1977) Anal. Lett, 10, pp. 1195-1207
Rohl, C. A., Baldwin, R. L., (1997) Biochemistry, 36, pp. 8435-8442
Bax, A., Davis, D. G., (1985) J. Magn. Reson, 65, pp. 355-360
Demas, J. N., Adamson, A. W., (1973) J. Am. Chem. Soc, 95, pp. 5159-5168
Mayer, L. D., Hope, M. J., Cullis, P. R., Janoff, A. S., (1985) Biochim. Biophys. Acta, 817, pp. 193-196
Determination of the conformation of the human VDAC1 N-terminal peptide, a protein moiety essential for the functional properties of the pore