Invariant Ser211 is involved in the catalysis of PD-L4, type I RIP from Phytolacca dioica leaves(364 views) Chambery A, Pisante M, Di Maro A, Di Zazzo E, Ruvo M, Costantini S, Colonna G, Parente A
Dipartimento di Scienze della Vita, Seconda Università di Napoli, Via Vivaldi 43, I-81100 Caserta, Italy
Istituto di Biostrutture e Bioimmagini, CNR, via Mezzocannone 16, I-80138 Napoli, Italy
Dipartimento di Biochimica e Biofisica, CRISCEB (Centro di Ricerca Interdipartimentale per le Scienze Computazionali e Biotecnologiche), Seconda Università di Napoli, Via Costantinopoli 16, I-80138 Napoli, Italy
Istituto di Scienze dell'Alimentazione, CNR, Via Roma 52 A/C, 83100 Avellino, Italy
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Ready, M. P., Kim, Y., Robertus, J. D., Site-directed mutagenesis of ricin A-chain and implications for the mechanism of action (1991) Proteins, 10, pp. 270-278
Katzin, B. J., Collins, E. J., Robertus, J. D., Structure of ricin A-chain at 2. 5 A (1991) Proteins, 10, pp. 251-259
Gawlak, S. L., Neubauer, M., Klei, H. E., Chang, C. Y., Einspahr, H. M., Siegall, C. B., Molecular, biological, and preliminary structural analysis of recombinant bryodin 1, a ribosome-inactivating protein from the plant Bryonia dioica (1997) Biochemistry, 36, pp. 3095-3103
Gould, J. H., Hartley, M. R., Welsh, P. C., Hoshizaki, D. K., Frankel, A., Roberts, L. M., Lord, J. M., Alteration of an amino acid residue outside the active site of the ricin A chain reduces its toxicity towards yeast ribosomes (1991) Mol Gen Genet, 230, pp. 81-90
Laemmli, U. K., Cleavage of structural proteins during the assembly of the head of bacteriophage T4 (1970) Nature, 227, pp. 680-685
Johnson, W. J., (1992) Analysis of circular dichroism spectra, pp. 426-447
Johnson, W. J., Protein secondary structure and circular dichroism: A practical guide (1990) Proteins, 7, pp. 205-214
Alston, R. W., Urbanikova, L., Sevcik, J., Lasagna, M., Reinhart, G. D., Scholtz, J. M., Pace, C. N., Contribution of single tryptophan residues to the fluorescence and stability of ribonuclease Sa (2004) Biophys J, 87, pp. 4036-4047
Massiah, A. J., Hartley, M. R., Wheat ribosome-inactivating proteins: Seed and leaf forms with different specificities and cofactor requirements (1995) Planta, 197, pp. 633-640
Altschul, S. F., Madden, T. L., Schaffer, A. A., Zhang, J., Zhang, Z., Miller, W., Lipman, D. J., Gapped BLAST and PSI-BLAST: A new generation of protein database search programs (1997) Nucleic Acids Res, 25, pp. 3389-3402
Facchiano, A. M., Stiuso, P., Chiusano, M. L., Caraglia, M., Giuberti, G., Marra, M., Abbruzzese, A., Colonna, G., Homology modelling of the human eukaryotic initiation factor 5A (eIF-5A) (2001) Protein Eng, 14, pp. 881-890
Sippl, M. J., Recognition of errors in three-dimensional structures of proteins (1993) Proteins, 17, pp. 355-362
Canutescu, A. A., Shelenkov, A. A., Dunbrack Jr, R. L., A graph-theory algorithm for rapid protein side-chain prediction (2003) Protein Sci, 12, pp. 2001-2014
Dunbrack Jr., R. L., Rotamer libraries in the 21st century (2002) Curr Opin Struct Biol, 12, pp. 431-440
Orengo, C. A., Michie, A. D., Jones, S., Jones, D. T., Swindells, M. B., Thornton, J. M., CATH-a hierarchic classification of protein domain structures (1997) Structure, 5, pp. 1093-1108
McDonald, I. K., Thornton, J. M., Satisfying hydrogen bonding potential in proteins (1994) J Mol Biol, 238, pp. 777-793
Wang, Y. X., Neamati, N., Jacob, J., Palmer, I., Stahl, S. J., Kaufman, J. D., Huang, P. L., Torchia, D. A., Solution structure of anti-HIV-1 and anti-tumor protein MAP30: Structural insights into its multiple functions (1999) Cell, 99, pp. 433-442
Wang, Y. X., Jacob, J., Wingfield, P. T., Palmer, I., Stahl, S. J., Kaufman, J. D., Huang, P. L., Torchia, D. A., Anti-HIV and anti-tumor protein MAP30, a 30 kDa single-strand type-I RIP, shares similar secondary structure and beta-sheet topology with the A chain of ricin, a type-II RIP (2000) Protein Sci, 9, pp. 138-144
Facchiano, A. M., Colonna, G., Ragone, R., Helix stabilizing factors and stabilization of thermophilic proteins: An X-ray based study (1998) Protein Eng, 11, pp. 753-760
Kurinov, I. V., Myers, D. E., Irvin, J. D., Uckun, F. M., X-ray crystallographic analysis of the structural basis for the interactions of pokeweed antiviral protein with its active site inhibitor and ribosomal RNA substrate analogs (1999) Protein Sci, 8, pp. 1765-1772
Marsden, C. J., Fulop, V., Day, P. J., Lord, J. M., The effect of mutations surrounding and within the active site on the catalytic activity of ricin A chain (2004) Eur J Biochem, 271, pp. 153-162
Robertus, J. D., Monzingo, A. F., The structure of ribosome inactivating proteins (2004) Mini Rev Med Chem, 4, pp. 477-486
Chen, J. K., Hung, C. H., Liaw, Y. C., Lin, J. Y., Identification of amino acid residues of abrin-a A chain is essential for catalysis and reassociation with abrin-a B chain by site-directed mutagenesis (1997) Protein Eng, 10, pp. 827-833
Fryxell, D. K., Gawlak, S. L., Dodge, R. W., Siegall, C. B., Identification of a specific tyrosine residue in Bryodin 1 distinct from the active site but required for full catalytic and cytotoxic activity (1998) Protein Sci, 7, pp. 318-324
Invariant Ser211 is involved in the catalysis of PD-L4, type I RIP from Phytolacca dioica leaves