A novel type of zinc finger DNA binding domain in the Agrobacterium tumefaciens transcriptional regulator Ros(587 views) Esposito S, Baglivo I, Malgieri G, Russo L, Zaccaro L, D'Andrea LD, Mammucari M, Di Blasio B, Isernia C, Fattorusso R, Pedone PV
Keywords: Amino Acids, Bacteria, Biochemistry, Characterization, Proteins, Agrobacterium Tumefaciens, Functional Characterization, Zinc Binding Motif, Cysteine, Dna Binding Protein, Histidine, Nitrogen 15, Ros Protein, Transcription Factor, Unclassified Drug, Zinc Finger Protein, Amino Acid Sequence, Article, Atomic Emission Spectrometry, Gel Mobility Shift Assay, Genetic Transcription, Matrix Assisted Laser Desorption Ionization Time Of Flight Mass Spectrometry, Molecular Cloning, Nitrogen Nuclear Magnetic Resonance, Nonhuman, Nucleotide Sequence, Polymerase Chain Reaction, Priority Journal, Protein Domain, Proton Nuclear Magnetic Resonance, Rhizobium Radiobacter, Transcription Regulation, Animals, Bacterial Proteins, Dna-Binding Proteins, Molecular Sequence Data, Plants, Protein Binding, Protein Structure, Tertiary, Repressor Proteins, Sequence Alignment, Bacteria (microorganisms), Eukaryota, Prokaryota,
Affiliations: *** IBB - CNR ***
Dipartimento di Scienze Ambientali, Seconda Università degli Studi di Napoli, Via Vivaldi 43, Caserta, 81100, Italy
Istituto di Biostrutture e Bioimmagini, CNR, via Mezzocannone, 16, 80134 Napoli, Italy
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Pavletich, N. P., Pabo, C. O., Zinc finger-DNA recognition: Crystal structure of a Zif268-DNA complex at 2. 1 (1991) Science, 252, pp. 809-817
Omichinski, J. G., Pedone, P. V., Felsenfeld, G., Gronenborn, A. M., Clore, G. M., The solution structure of a specific GAGA factor-DNA complex reveals a modular binding mode (1997) Nat. Struct. Biol., 4, pp. 122-130
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Nolle, R. T., Conlin, R. M., Harrison, S. C., Brown, R. S., Differing roles for zinc fingers in DNA recognition: Structure of a six-finger transcription factor IIIA complex (1998) Proc. Natl. Acad. Sci. U. S. A., 95, pp. 2938-2943
Englbrecht, C. C., Schoof, H., Bohm, S., Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome (2004) BMC Genomics, 5, p. 39
Pedone, P. V., Ghirlando, R., Clore, G. M., Gronenborn, A. M., Felsenfeld, G., Omichinski, J. G., The single Cys2-His2 zinc finger domain of the GAGA protein flanked by basic residues is sufficient for high affinity specific DNA binding (1996) Proc. Natl. Acad. Sci. U. S. A., 93, pp. 2822-2826
Chou, A. Y., Archdeacon, J., Kado, C. I., Agrobacterium transcriptional regulator Ros is prokaryotic zinc finger protein that regulates the plant oncogene ipt (1998) Proc. Natl. Acad. Sci. U. S. A., 95, pp. 5293-5298
Kado, C. I., Negative transcriptional regulation of virulence and oncogenes of the Ti plasmid by bearing a consrved C2H2-zinc finger motif (2002) Plasmid, 48, pp. 179-185
Bittinger, M. A., Milner, J. L., Saville, B. J., Handelsman, J., rosR, a determinant of nodulation competitivness in Rhizobium etli (1997) Mol. Plant-Microbe Interact., 10, pp. 80-186
Romine, M. F., Stillwell, L. C., Wong, K. K., Thurston, S. J., Sisk, E. C., Sensen, C., Gaasterland, T., Saffer, J. D., Complete sequence of a 184 kilobase catabolic plasmid from Sphingomonas aromaticivorans F199 (1999) J. Bacteriol., 181, pp. 1585-1602
D'Souza-Ault, M. R., Cooley, M. B., Kado, C. I., Analysis of the Ros repressor of Agrobacterium virC and virD operons: Molecular intercommunication between plasmid and chromosomal genes (1993) J. Bacteriol., 175, pp. 3486-3490
White, B. A., (1993) Methods in Molecular Biology, 15. , Humana Press, Totowa, NJ
Boyer, P. D., Spectrophotometric study of the reaction of protein sulfhydryl groups with organic mercurials (1954) J. Am. Chem. Soc., 76, pp. 4331-4337
Tang, W., Wang, C. C., Zinc finger and thiol-disulfide oxidoreductase activities of chaperone DnaJ (2001) Biochemistry, 40, pp. 14985-14994
Simpson, R. J. Y., Cram, E. D., Czolij, R., Matthews, J. M., Crossley, M., Mackay, J. P., CCHX zinc finger derivatives retain the ability to bind Zn (II) and mediate protein-DNA interaction (2003) J. Biol. Chem., 278, pp. 28011-28018
Pedone, P. V., Omichinski, J. G., Nony, P., Trainor, C., Gronenborn, A. M., Clore, G. M., Felsenfeld, G., The N-terminal fingers of chicken GATA-2 and GATA-3 are independent sequence-specific DNA binding domains (1997) EMBO J., 16, pp. 2874-2882
A novel type of zinc finger DNA binding domain in the Agrobacterium tumefaciens transcriptional regulator Ros
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