X-ray structural studies of the entire extracellular region of the serine/threonine kinase PrkC from Staphylococcus aureus (510 views)
Biochem J (ISSN: 0264-6021, 1470-8728electronic, 0264-6021linking), 2011 Apr 1; 435(1): 33-41.
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Paper type: Journal Article,
Impact factor: 4.897, 5-year impact factor: 4.693
Url: http://www.scopus.com/inward/record.url?eid=2-s2.0-79952848730&partnerID=40&md5=cf1b400a8482cb9987f0f6ba90d8b213
Keywords: Cell Wall, Penicillin Binding-Associated And Serine Threonine Kinase-Associated Domain (pasta Domain), Peptidoglycan, Prkc, Staphylococcus Aureus, Bacterial Enzyme, Prkc Protein, Protein Serine Threonine Kinase, Unclassified Drug, Article, Carboxy Terminal Sequence, Controlled Study, Enzyme Activation, Enzyme Structure, Extracellular Matrix, Nonhuman, Oligomerization, Priority Journal, Protein Domain, Regulatory Mechanism, Upregulation, X Ray Crystallography, Bacterial Proteins, X-Ray, Dimerization, Penicillin-Binding Proteins, Protein Conformation, Protein Interaction Domains And Motifs, Protein Kinase C, Recombinant Proteins, Bacillus Subtilis, Bacteria (microorganisms),
Affiliations:
*** IBB - CNR ***
Institute of Biostructures and Bioimaging, CNR, Via Mezzocannone 16, I-80134, Napoli, Italy
Department of Organic Chemistry and Biochemistry, University of Naples Federico II, I-80134, Via Cinthia 4, I-80126, Napoli, Italy
References:
Munoz-Dorado, J., Inouye, S., Inouye, M., A gene encoding a protein serine/threonine kinase is required for normal development of M. xanthus, a gram-negative bacterium (1991) Cell, 67 (5), pp. 995-100
Madec, E., Laszkiewicz, A., Iwanicki, A., Obuchowski, M., Seror, S., Characterization of a membrane-linked Ser/Thr protein kinase in Bacillus subtilis, implicated in developmental processes (2002) Mol. Microbiol., 46, pp. 571-586
Fiuza, M., Canova, M.J., Zanella-Cleon, I., Becchi, M., Cozzone, A.J., Mateos, L.M., Kremer, L., Molle, V., From the characterization of the four serine/threonine protein kinases (PknA/B/G/L) of Corynebacterium glutamicum toward the role of PknA and PknB in cell division (2008) J. Biol. Chem., 283, pp. 18099-18112
Madec, E., Stensballe, A., Kjellstrom, S., Cladiere, L., Obuchowski, M., Jensen, O.N., Seror, S.J., Mass spectrometry and site-directed mutagenesis identify several autophosphorylated residues required for the activity of PrkC, a Ser/Thr kinase from Bacillus subtilis (2003) J. Mol. Biol., 330, pp. 459-472
Absalon, C., Obuchowski, M., Madec, E., Delattre, D., Holland, I.B., Seror, S.J., CpgA, EF-Tu and the stressosome protein YezB are substrates of the Ser/Thr kinase/phosphatase couple, PrkC/PrpC, in Bacillus subtilis (2009) Microbiology, 155, pp. 932-943
Shah, I.M., Laaberki, M.H., Popham, D.L., Dworkin, J., A eukaryotic-like Ser/Thr kinase signals bacteria to exit dormancy in response to peptidoglycan fragments (2008) Cell, 135, pp. 486-496
Shah, I.M., Dworkin, J., Induction and regulation of a secreted peptidoglycan hydrolase by a membrane Ser/Thr kinase that detects muropeptides (2010) Mol. Microbiol., 75, pp. 1232-1243
Kana, B.D., Mizrahi, V., Resuscitation-promoting factors as lytic enzymes for bacterial growth and signaling (2010) FEMS Immunol. Med. Microbiol., 58, pp. 39-50
Warner, D.F., Mizrahi, V., The survival kit of Mycobacterium tuberculosis (2007) Nat. Med., 13, pp. 282-284
Keep, N.H., Ward, J.M., Cohen-Gonsaud, M., Henderson, B., Wake up! Peptidoglycan lysis and bacterial non-growth states (2006) Trends in Microbiology, 14 (6), pp. 271-276. , DOI 10.1016/j.tim.2006.04.003, PII S0966842X06000953
Hett, E.C., Rubin, E.J., Bacterial growth and cell division: A mycobacterial perspective (2008) Microbiol. Mol. Biol. Rev., 72, pp. 126-156
Ruggiero, A., Marasco, D., Squeglia, F., Soldini, S., Pedone, E., Pedone, C., Berisio, R., Structure and functional regulation of RipA, a mycobacterial enzyme essential for daughter cell separation (2010) Structure, 18, pp. 1184-1190
Gaidenko, T.A., Kim, T.J., Price, C.W., The PrpC serine-threonine phosphatase and PrkC kinase have opposing physiological roles in stationary-phase Bacillus subtilis cells (2002) J. Bacteriol., 184, pp. 6109-6114
McGahee, W., Lowy, F.D., Staphylococcal infections in the intensive care unit (2000) Semin. Respir. Infect., 15, pp. 308-313
Ohlsen, K., Donat, S., The impact of serine/threonine phosphorylation in Staphylococcus aureus (2010) Int. J. Med. Microbiol., 300, pp. 137-141
Yeats, C., Finn, R.D., Bateman, A., The PASTA domain: A β-lactam-binding domain (2002) Trends Biochem. Sci., 27, pp. 438-440
Gordon, E., Mouz, N., Duee, E., Dideberg, O., The crystal structure of the penicillin-binding protein 2x from Streptococcus pneumoniae and its acyl-enzyme form: Implication in drug resistance (2000) J. Mol. Biol., 299, pp. 477-485
Dessen, A., Mouz, N., Gordon, E., Hopkins, J., Dideberg, O., Crystal structure of PBP2x from a highly penicillin-resistant Streptococcus pneumoniae clinical isolate: A mosaic framework containing 83 mutations (2001) J. Biol. Chem., 276, pp. 45106-45112
Ruggiero, A., Squeglia, F., Izzo, V., Silipo, A., Vitagliano, L., Molinaro, A., Berisio, R., Expression, purification, crystallization and preliminary X-ray crystallographic analysis of the peptidoglycan binding region of the Ser/Thr kinase PrkC from Staphylococcus aureus (2010) Protein Pept. Lett., 17, pp. 1296-1299
Otwinowski, Z., Minor, W., Processing of X-ray diffraction data collected in oscillation mode (1997) Methods in Enzymology, 276, pp. 307-326. , DOI 10.1016/S0076-6879(97)76066-X
Panjikar, S., Parthasarathy, V., Lamzin, V.S., Weiss, M.S., Tucker, P.A., Auto-Rickshaw: An automated crystal structure determination platform as an efficient tool for the validation of an X-ray diffraction experiment (2005) Acta Crystallogr. Sect. D Biol. Crystallogr., 61, pp. 449-457
Sheldrick, G.M., A short history of SHELX (2008) Acta Crystallogr. Sect. A Found Crystallogr., 64, pp. 112-122
Terwilliger, T., SOLVE and RESOLVE: Automated structure solution, density modification and model building (2004) J. Synchrotron Radiat., 11, pp. 49-52
Langer, G., Cohen, S.X., Lamzin, V.S., Perrakis, A., Automated macromolecular model building for X-ray crystallography using ARP/wARP version 7 (2008) Nat. Protoc., 3, pp. 1171-1179
Potterton, E., Briggs, P., Turkenburg, M., Dodson, E., A graphical user interface to the CCP4 program suite (2003) Acta Crystallogr. Sect. D Biol. Crystallogr., 59, pp. 1131-1137
Laskowski, R.A., Rullmannn, J.A., MacArthur, M.W., Kaptein, R., Thornton, J.M., AQUA and PROCHECK-NMR: Programs for checking the quality of protein structures solved by NMR (1996) J. Biomol. NMR, 8, pp. 477-486
Hu, J., Yan, C., HMM-RA: An improved method for α-helical transmembrane protein topology prediction (2008) Bioinform. Biol. Insights, 2, pp. 67-74
Bertaccini, E., Trudell, J.R., Predicting the transmembrane secondary structure of ligand-gated ion channels (2002) Protein Eng., 15, pp. 443-454
Girardin, S.E., Boneca, I.G., Carneiro, L.A.M., Antignac, A., Jehanno, M., Viala, J., Tedin, K., Philpott, D.J., Nod1 detects a unique muropeptide from gram-negative bacterial peptidoglycan (2003) Science, 300 (5625), pp. 1584-1587. , DOI 10.1126/science.1084677
Erbs, G., Silipo, A., Aslam, S., De Castro, C., Liparoti, V., Flagiello, A., Pucci, P., Molinaro, A., Peptidoglycan and muropeptides from pathogens Agrobacterium and Xanthomonas elicit plant innate immunity: Structure and activity (2008) Chem. Biol., 15, pp. 438-448
Finn, R.D., Tate, J., Mistry, J., Coggill, P.C., Sammut, S.J., Hotz, H.-R., Ceric, G., Bateman, A., The Pfam protein families database (2008) Nucleic Acids Research, 36 (SUPPL. 1), pp. D281-D288. , DOI 10.1093/nar/gkm960
Pares, S., Mouz, N., Petillot, Y., Hakenbeck, R., Dideberg, O., X-ray structure of Streptococcus pneumoniae PBP2x, a primary penicillin target enzyme (1996) Nat. Struct. Biol., 3, pp. 284-289
Barthe, P., Mukamolova, G.V., Roumestand, C., Cohen-Gonsaud, M., The structure of PknB extracellular PASTA domain from Mycobacterium tuberculosis suggests a ligand-dependent kinase activation (2010) Structure, 18, pp. 606-615
Holm, L., Sander, C., Dali: A network tool for protein structure comparison (1995) Trends Biochem. Sci., 20, pp. 478-480
Bork, P., Holm, L., Sander, C., The immunoglobulin fold: Structural classification, sequence patterns and common core (1994) J. Mol. Biol., 242, pp. 309-320
Lemmon, M.A., Schlessinger, J., Cell signaling by receptor tyrosine kinases (2010) Cell, 141, pp. 1117-1134
Bowden, M.G., Heuck, A.P., Ponnuraj, K., Kolosova, E., Choe, D., Gurusiddappa, S., Narayana, S.V., Hook, M., Evidence for the "dock, lock, and latch" ligand binding mechanism of the staphylococcal microbial surface component recognizing adhesive matrix molecules (MSCRAMM) SdrG (2008) J. Biol. Chem., 283, pp. 638-647
Ganesh, V.K., Rivera, J.J., Smeds, E., Ko, Y.P., Bowden, M.G., Wann, E.R., Gurusiddappa, S., Hook, M., A structural model of the Staphylococcus aureus ClfA - Fibrinogen interaction opens new avenues for the design of anti-staphylococcal therapeutics (2008) PLoS Pathog., 4, pp. e1000226
Carafoli, F., Saffell, J.L., Hohenester, E., Structure of the tandem fibronectin type 3 domains of neural cell adhesion molecule (2008) J. Mol. Biol., 377, pp. 524-534
Richardson, J.S., Richardson, D.C., Natural β-sheet proteins use negative design to avoid edge-to-edge aggregation (2002) Proc. Natl. Acad. Sci. U.S.A., 99, pp. 2754-2759
Kline, K.A., Dodson, K.W., Caparon, M.G., Hultgren, S.J., A tale of two pili: Assembly and function of pili in bacteria (2010) Trends Microbiol., 18, pp. 224-232
Vitagliano, L., Ruggiero, A., Pedone, C., Berisio, R., A molecular dynamics study of pilus subunits: Insights into pilus biogenesis (2007) J. Mol. Biol., 367, pp. 935-941
Dodson, K.W., Pinkner, J.S., Rose, T., Magnusson, G., Hultgren, S.J., Waksman, G., Structural basis of the interaction of the pyelonephritic E. coli adhesin to its human kidney receptor (2001) Cell, 105 (6), pp. 733-743. , DOI 10.1016/S0092-8674(01)00388-9
Imberty, A., Mitchell, E.P., Wimmerova, M., Structural basis of high-affinity glycan recognition by bacterial and fungal lectins (2005) Curr. Opin. Struct. Biol., 15, pp. 525-534
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Chung, I., Akita, R., Vandlen, R., Toomre, D., Schlessinger, J., Mellman, I., Spatial control of EGF receptor activation by reversible dimerization on living cells (2010) Nature, 464, pp. 783-787
Mieczkowski, C., Iavarone, A.T., Alber, T., Auto-activation mechanism of the Mycobacterium tuberculosis PknB receptor Ser/Thr kinase (2008) EMBO J., 27, pp. 3186-3197
Debarbouille, M., Dramsi, S., Dussurget, O., Nahori, M.A., Vaganay, E., Jouvion, G., Cozzone, A., Duclos, B., Characterization of a serine/threonine kinase involved in virulence of Staphylococcus aureus (2009) J. Bacteriol., 191, pp. 4070-4081
Schlessinger, J., Plotnikov, A.N., Ibrahimi, O.A., Eliseenkova, A.V., Yeh, B.K., Yayon, A., Linhardt, R.J., Mohammadi, M., Crystal structure of a ternary FGF - FGFR - heparin complex reveals a dual role for heparin in FGFR binding and dimerization (2000) Mol. Cell, 6, pp. 743-750
D'Andrea, L.D., Iaccarino, G., Fattorusso, R., Sorriento, D., Carannante, C., Capasso, D., Trimarco, B., Pedone, C., Targeting angiogenesis: Structural characterization and biological properties of a de novo engineered VEGF mimicking peptide (2005) Proc. Natl. Acad. Sci. U.S.A., 102, pp. 14215-14220
Shah, I. M., Laaberki, M. H., Popham, D. L., Dworkin, J., A eukaryotic-like Ser/Thr kinase signals bacteria to exit dormancy in response to peptidoglycan fragments (2008) Cell, 135, pp. 486-496
Shah, I. M., Dworkin, J., Induction and regulation of a secreted peptidoglycan hydrolase by a membrane Ser/Thr kinase that detects muropeptides (2010) Mol. Microbiol., 75, pp. 1232-1243
Kana, B. D., Mizrahi, V., Resuscitation-promoting factors as lytic enzymes for bacterial growth and signaling (2010) FEMS Immunol. Med. Microbiol., 58, pp. 39-50
Warner, D. F., Mizrahi, V., The survival kit of Mycobacterium tuberculosis (2007) Nat. Med., 13, pp. 282-284
Keep, N. H., Ward, J. M., Cohen-Gonsaud, M., Henderson, B., Wake up! Peptidoglycan lysis and bacterial non-growth states (2006) Trends in Microbiology, 14 (6), pp. 271-276. , DOI 10. 1016/j. tim. 2006. 04. 003, PII S0966842X06000953
Hett, E. C., Rubin, E. J., Bacterial growth and cell division: A mycobacterial perspective (2008) Microbiol. Mol. Biol. Rev., 72, pp. 126-156
Gaidenko, T. A., Kim, T. J., Price, C. W., The PrpC serine-threonine phosphatase and PrkC kinase have opposing physiological roles in stationary-phase Bacillus subtilis cells (2002) J. Bacteriol., 184, pp. 6109-6114
Sheldrick, G. M., A short history of SHELX (2008) Acta Crystallogr. Sect. A Found Crystallogr., 64, pp. 112-122
Laskowski, R. A., Rullmannn, J. A., MacArthur, M. W., Kaptein, R., Thornton, J. M., AQUA and PROCHECK-NMR: Programs for checking the quality of protein structures solved by NMR (1996) J. Biomol. NMR, 8, pp. 477-486
Girardin, S. E., Boneca, I. G., Carneiro, L. A. M., Antignac, A., Jehanno, M., Viala, J., Tedin, K., Philpott, D. J., Nod1 detects a unique muropeptide from gram-negative bacterial peptidoglycan (2003) Science, 300 (5625), pp. 1584-1587. , DOI 10. 1126/science. 1084677
Finn, R. D., Tate, J., Mistry, J., Coggill, P. C., Sammut, S. J., Hotz, H. -R., Ceric, G., Bateman, A., The Pfam protein families database (2008) Nucleic Acids Research, 36 (SUPPL. 1), pp. D281-D288. , DOI 10. 1093/nar/gkm960
Lemmon, M. A., Schlessinger, J., Cell signaling by receptor tyrosine kinases (2010) Cell, 141, pp. 1117-1134
Bowden, M. G., Heuck, A. P., Ponnuraj, K., Kolosova, E., Choe, D., Gurusiddappa, S., Narayana, S. V., Hook, M., Evidence for the "dock, lock, and latch" ligand binding mechanism of the staphylococcal microbial surface component recognizing adhesive matrix molecules (MSCRAMM) SdrG (2008) J. Biol. Chem., 283, pp. 638-647
Ganesh, V. K., Rivera, J. J., Smeds, E., Ko, Y. P., Bowden, M. G., Wann, E. R., Gurusiddappa, S., Hook, M., A structural model of the Staphylococcus aureus ClfA - Fibrinogen interaction opens new avenues for the design of anti-staphylococcal therapeutics (2008) PLoS Pathog., 4, pp. e1000226
Richardson, J. S., Richardson, D. C., Natural -sheet proteins use negative design to avoid edge-to-edge aggregation (2002) Proc. Natl. Acad. Sci. U. S. A., 99, pp. 2754-2759
Kline, K. A., Dodson, K. W., Caparon, M. G., Hultgren, S. J., A tale of two pili: Assembly and function of pili in bacteria (2010) Trends Microbiol., 18, pp. 224-232
Dodson, K. W., Pinkner, J. S., Rose, T., Magnusson, G., Hultgren, S. J., Waksman, G., Structural basis of the interaction of the pyelonephritic E. coli adhesin to its human kidney receptor (2001) Cell, 105 (6), pp. 733-743. , DOI 10. 1016/S0092-8674 (01) 00388-9
D'Andrea, L. D., Iaccarino, G., Fattorusso, R., Sorriento, D., Carannante, C., Capasso, D., Trimarco, B., Pedone, C., Targeting angiogenesis: Structural characterization and biological properties of a de novo engineered VEGF mimicking peptide (2005) Proc. Natl. Acad. Sci. U. S. A., 102, pp. 14215-14220
Biochem J (ISSN: 0264-6021, 1470-8728electronic, 0264-6021linking), 2011 Apr 1; 435(1): 33-41.
Export to BibTeX Export to EndNote
Paper type: Journal Article,
Impact factor: 4.897, 5-year impact factor: 4.693
Url: http://www.scopus.com/inward/record.url?eid=2-s2.0-79952848730&partnerID=40&md5=cf1b400a8482cb9987f0f6ba90d8b213
Keywords: Cell Wall, Penicillin Binding-Associated And Serine Threonine Kinase-Associated Domain (pasta Domain), Peptidoglycan, Prkc, Staphylococcus Aureus, Bacterial Enzyme, Prkc Protein, Protein Serine Threonine Kinase, Unclassified Drug, Article, Carboxy Terminal Sequence, Controlled Study, Enzyme Activation, Enzyme Structure, Extracellular Matrix, Nonhuman, Oligomerization, Priority Journal, Protein Domain, Regulatory Mechanism, Upregulation, X Ray Crystallography, Bacterial Proteins, X-Ray, Dimerization, Penicillin-Binding Proteins, Protein Conformation, Protein Interaction Domains And Motifs, Protein Kinase C, Recombinant Proteins, Bacillus Subtilis, Bacteria (microorganisms),
Affiliations:
*** IBB - CNR ***
Institute of Biostructures and Bioimaging, CNR, Via Mezzocannone 16, I-80134, Napoli, Italy
Department of Organic Chemistry and Biochemistry, University of Naples Federico II, I-80134, Via Cinthia 4, I-80126, Napoli, Italy
References:
Munoz-Dorado, J., Inouye, S., Inouye, M., A gene encoding a protein serine/threonine kinase is required for normal development of M. xanthus, a gram-negative bacterium (1991) Cell, 67 (5), pp. 995-100
Madec, E., Laszkiewicz, A., Iwanicki, A., Obuchowski, M., Seror, S., Characterization of a membrane-linked Ser/Thr protein kinase in Bacillus subtilis, implicated in developmental processes (2002) Mol. Microbiol., 46, pp. 571-586
Fiuza, M., Canova, M.J., Zanella-Cleon, I., Becchi, M., Cozzone, A.J., Mateos, L.M., Kremer, L., Molle, V., From the characterization of the four serine/threonine protein kinases (PknA/B/G/L) of Corynebacterium glutamicum toward the role of PknA and PknB in cell division (2008) J. Biol. Chem., 283, pp. 18099-18112
Madec, E., Stensballe, A., Kjellstrom, S., Cladiere, L., Obuchowski, M., Jensen, O.N., Seror, S.J., Mass spectrometry and site-directed mutagenesis identify several autophosphorylated residues required for the activity of PrkC, a Ser/Thr kinase from Bacillus subtilis (2003) J. Mol. Biol., 330, pp. 459-472
Absalon, C., Obuchowski, M., Madec, E., Delattre, D., Holland, I.B., Seror, S.J., CpgA, EF-Tu and the stressosome protein YezB are substrates of the Ser/Thr kinase/phosphatase couple, PrkC/PrpC, in Bacillus subtilis (2009) Microbiology, 155, pp. 932-943
Shah, I.M., Laaberki, M.H., Popham, D.L., Dworkin, J., A eukaryotic-like Ser/Thr kinase signals bacteria to exit dormancy in response to peptidoglycan fragments (2008) Cell, 135, pp. 486-496
Shah, I.M., Dworkin, J., Induction and regulation of a secreted peptidoglycan hydrolase by a membrane Ser/Thr kinase that detects muropeptides (2010) Mol. Microbiol., 75, pp. 1232-1243
Kana, B.D., Mizrahi, V., Resuscitation-promoting factors as lytic enzymes for bacterial growth and signaling (2010) FEMS Immunol. Med. Microbiol., 58, pp. 39-50
Warner, D.F., Mizrahi, V., The survival kit of Mycobacterium tuberculosis (2007) Nat. Med., 13, pp. 282-284
Keep, N.H., Ward, J.M., Cohen-Gonsaud, M., Henderson, B., Wake up! Peptidoglycan lysis and bacterial non-growth states (2006) Trends in Microbiology, 14 (6), pp. 271-276. , DOI 10.1016/j.tim.2006.04.003, PII S0966842X06000953
Hett, E.C., Rubin, E.J., Bacterial growth and cell division: A mycobacterial perspective (2008) Microbiol. Mol. Biol. Rev., 72, pp. 126-156
Ruggiero, A., Marasco, D., Squeglia, F., Soldini, S., Pedone, E., Pedone, C., Berisio, R., Structure and functional regulation of RipA, a mycobacterial enzyme essential for daughter cell separation (2010) Structure, 18, pp. 1184-1190
Gaidenko, T.A., Kim, T.J., Price, C.W., The PrpC serine-threonine phosphatase and PrkC kinase have opposing physiological roles in stationary-phase Bacillus subtilis cells (2002) J. Bacteriol., 184, pp. 6109-6114
McGahee, W., Lowy, F.D., Staphylococcal infections in the intensive care unit (2000) Semin. Respir. Infect., 15, pp. 308-313
Ohlsen, K., Donat, S., The impact of serine/threonine phosphorylation in Staphylococcus aureus (2010) Int. J. Med. Microbiol., 300, pp. 137-141
Yeats, C., Finn, R.D., Bateman, A., The PASTA domain: A β-lactam-binding domain (2002) Trends Biochem. Sci., 27, pp. 438-440
Gordon, E., Mouz, N., Duee, E., Dideberg, O., The crystal structure of the penicillin-binding protein 2x from Streptococcus pneumoniae and its acyl-enzyme form: Implication in drug resistance (2000) J. Mol. Biol., 299, pp. 477-485
Dessen, A., Mouz, N., Gordon, E., Hopkins, J., Dideberg, O., Crystal structure of PBP2x from a highly penicillin-resistant Streptococcus pneumoniae clinical isolate: A mosaic framework containing 83 mutations (2001) J. Biol. Chem., 276, pp. 45106-45112
Ruggiero, A., Squeglia, F., Izzo, V., Silipo, A., Vitagliano, L., Molinaro, A., Berisio, R., Expression, purification, crystallization and preliminary X-ray crystallographic analysis of the peptidoglycan binding region of the Ser/Thr kinase PrkC from Staphylococcus aureus (2010) Protein Pept. Lett., 17, pp. 1296-1299
Otwinowski, Z., Minor, W., Processing of X-ray diffraction data collected in oscillation mode (1997) Methods in Enzymology, 276, pp. 307-326. , DOI 10.1016/S0076-6879(97)76066-X
Panjikar, S., Parthasarathy, V., Lamzin, V.S., Weiss, M.S., Tucker, P.A., Auto-Rickshaw: An automated crystal structure determination platform as an efficient tool for the validation of an X-ray diffraction experiment (2005) Acta Crystallogr. Sect. D Biol. Crystallogr., 61, pp. 449-457
Sheldrick, G.M., A short history of SHELX (2008) Acta Crystallogr. Sect. A Found Crystallogr., 64, pp. 112-122
Terwilliger, T., SOLVE and RESOLVE: Automated structure solution, density modification and model building (2004) J. Synchrotron Radiat., 11, pp. 49-52
Langer, G., Cohen, S.X., Lamzin, V.S., Perrakis, A., Automated macromolecular model building for X-ray crystallography using ARP/wARP version 7 (2008) Nat. Protoc., 3, pp. 1171-1179
Potterton, E., Briggs, P., Turkenburg, M., Dodson, E., A graphical user interface to the CCP4 program suite (2003) Acta Crystallogr. Sect. D Biol. Crystallogr., 59, pp. 1131-1137
Laskowski, R.A., Rullmannn, J.A., MacArthur, M.W., Kaptein, R., Thornton, J.M., AQUA and PROCHECK-NMR: Programs for checking the quality of protein structures solved by NMR (1996) J. Biomol. NMR, 8, pp. 477-486
Hu, J., Yan, C., HMM-RA: An improved method for α-helical transmembrane protein topology prediction (2008) Bioinform. Biol. Insights, 2, pp. 67-74
Bertaccini, E., Trudell, J.R., Predicting the transmembrane secondary structure of ligand-gated ion channels (2002) Protein Eng., 15, pp. 443-454
Girardin, S.E., Boneca, I.G., Carneiro, L.A.M., Antignac, A., Jehanno, M., Viala, J., Tedin, K., Philpott, D.J., Nod1 detects a unique muropeptide from gram-negative bacterial peptidoglycan (2003) Science, 300 (5625), pp. 1584-1587. , DOI 10.1126/science.1084677
Erbs, G., Silipo, A., Aslam, S., De Castro, C., Liparoti, V., Flagiello, A., Pucci, P., Molinaro, A., Peptidoglycan and muropeptides from pathogens Agrobacterium and Xanthomonas elicit plant innate immunity: Structure and activity (2008) Chem. Biol., 15, pp. 438-448
Finn, R.D., Tate, J., Mistry, J., Coggill, P.C., Sammut, S.J., Hotz, H.-R., Ceric, G., Bateman, A., The Pfam protein families database (2008) Nucleic Acids Research, 36 (SUPPL. 1), pp. D281-D288. , DOI 10.1093/nar/gkm960
Pares, S., Mouz, N., Petillot, Y., Hakenbeck, R., Dideberg, O., X-ray structure of Streptococcus pneumoniae PBP2x, a primary penicillin target enzyme (1996) Nat. Struct. Biol., 3, pp. 284-289
Barthe, P., Mukamolova, G.V., Roumestand, C., Cohen-Gonsaud, M., The structure of PknB extracellular PASTA domain from Mycobacterium tuberculosis suggests a ligand-dependent kinase activation (2010) Structure, 18, pp. 606-615
Holm, L., Sander, C., Dali: A network tool for protein structure comparison (1995) Trends Biochem. Sci., 20, pp. 478-480
Bork, P., Holm, L., Sander, C., The immunoglobulin fold: Structural classification, sequence patterns and common core (1994) J. Mol. Biol., 242, pp. 309-320
Lemmon, M.A., Schlessinger, J., Cell signaling by receptor tyrosine kinases (2010) Cell, 141, pp. 1117-1134
Bowden, M.G., Heuck, A.P., Ponnuraj, K., Kolosova, E., Choe, D., Gurusiddappa, S., Narayana, S.V., Hook, M., Evidence for the "dock, lock, and latch" ligand binding mechanism of the staphylococcal microbial surface component recognizing adhesive matrix molecules (MSCRAMM) SdrG (2008) J. Biol. Chem., 283, pp. 638-647
Ganesh, V.K., Rivera, J.J., Smeds, E., Ko, Y.P., Bowden, M.G., Wann, E.R., Gurusiddappa, S., Hook, M., A structural model of the Staphylococcus aureus ClfA - Fibrinogen interaction opens new avenues for the design of anti-staphylococcal therapeutics (2008) PLoS Pathog., 4, pp. e1000226
Carafoli, F., Saffell, J.L., Hohenester, E., Structure of the tandem fibronectin type 3 domains of neural cell adhesion molecule (2008) J. Mol. Biol., 377, pp. 524-534
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X-ray structural studies of the entire extracellular region of the serine/threonine kinase PrkC from Staphylococcus aureus
Bacterial serine/threonine kinases modulate a wide number of cellular processes. The serine/threonine kinase PrkC from the human pathogen Staphylococcus aureus was also shown to induce germination of Bacillus subtilis spores, in response to cell wall muropeptides. The presence of muropeptides in the bacterial extracellular milieu is a strong signal that the growing conditions are promising. In the present paper, we report the X-ray structure of the entire extracellular region of PrkC from S. aureus. This structure reveals that the extracellular region of PrkC, EC-PrkC, is a linear modular structure composed of three PASTA (penicillin binding-associated and serine/threonine kinase-associated) domains and an unpredicted C-terminal domain, which presents the typical features of adhesive proteins. Using several solution techniques, we also found that EC-PrkC shows no tendency to dimerize even in the presence of high concentrations of muropeptides. X-ray structural results obtained in the present study provide molecular clues into the mechanism of muropeptide-induced PrkC activation. ©The Authors Journal compilation ©2011 Biochemical Society.
Bacterial serine/threonine kinases modulate a wide number of cellular processes. The serine/threonine kinase PrkC from the human pathogen Staphylococcus aureus was also shown to induce germination of Bacillus subtilis spores, in response to cell wall muropeptides. The presence of muropeptides in the bacterial extracellular milieu is a strong signal that the growing conditions are promising. In the present paper, we report the X-ray structure of the entire extracellular region of PrkC from S. aureus. This structure reveals that the extracellular region of PrkC, EC-PrkC, is a linear modular structure composed of three PASTA (penicillin binding-associated and serine/threonine kinase-associated) domains and an unpredicted C-terminal domain, which presents the typical features of adhesive proteins. Using several solution techniques, we also found that EC-PrkC shows no tendency to dimerize even in the presence of high concentrations of muropeptides. X-ray structural results obtained in the present study provide molecular clues into the mechanism of muropeptide-induced PrkC activation. ©The Authors Journal compilation ©2011 Biochemical Society.
X-ray structural studies of the entire extracellular region of the serine/threonine kinase PrkC from Staphylococcus aureus
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X-ray structural studies of the entire extracellular region of the serine/threonine kinase PrkC from Staphylococcus aureus
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Esposito L, Sica F, Raia CA, Giordano A, Rossi M, Mazzarella L, Zagari A
* Crystal Structure Of The Alcohol Dehydrogenase From The Hyperthermophilic Archaeon Sulfolobus Solfataricus At 1. 85 Angstrom Resolution (435 views)
J Mol Biol (ISSN: 0022-2836, 1089-8638, 1089-8638electronic), 2002 Apr 26; 318(2): 463-477.
Impact Factor: 5.359
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* Structural and Binding Properties of the Active Cell Wall Hydrolase RipA from M. tuberculosis, a Promising Biosensing Molecule for Early Warning Bacterial Detection (5 views)
Curr Med Chem (ISSN: 0929-8673linking), 2022; 29(24): 4282-4292.
Impact Factor: 4.74
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Ronda L, Tonelli A, Sogne E, Autiero I, Spyrakis F, Pellegrino S, Abbiati G, Maffioli E, Schulte C, Piano R, Cozzini P, Mozzarelli A, Bettati S, Clerici F, Milani P, Lenardi C, Tedeschi G, Gelmi ML
* Rational Design of a User-Friendly Aptamer/Peptide-Based Device for the Detection of Staphylococcus aureus (84 views)
Sensors (ISSN: 1424-8220linking, 1424-3210), 2020 Sep 2; 20(17): N/D-N/D.
Impact Factor: 3.275
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Squeglia F, Moreira M, Ruggiero A, Berisio R
* The Cell Wall Hydrolytic NlpC/P60 Endopeptidases in Mycobacterial Cytokinesis: A Structural Perspective (217 views)
Cells (ISSN: 2073-4409linking, 2073-4409electronic), 2019 Jun 18; 8(6): N/D-N/D.
Impact Factor: 5.7
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Squeglia F, Ruggiero A, Berisio R
* Chemistry of Peptidoglycan in Mycobacterium tuberculosis Life Cycle: An off-the-wall Balance of Synthesis and Degradation (103 views)
Chemistry (ISSN: 0947-6539linking, 1521-3765electronic), 2018 Feb 21; 24 (11 ): 2533-2546.
Impact Factor: 5.476
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Squeglia F, Ruggiero A, Berisio R
* Chemistry of Peptidoglycan in Mycobacterium tuberculosis life style: an off-the-wall balance of synthesis and degradation (479 views) (PDF 221 views)
Chemistry (ISSN: 1521-3765electronic, 0947-6539linking), 2018; 24: 2533-2546.
Impact Factor: 5.317
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Berisio R, Squeglia F, Ruggiero A
* Editorial: Molecular Scenarios Behind Infectious Diseases (315 views)
Curr Med Chem (ISSN: 0929-8673, 1875-533x, 1875-533xelectronic), 2017 Nov 24; 24(36): 3939-3941.
Impact Factor: 3.469
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Dennehy R, RomanoM, Ruggiero A, Mohamed YF, Dignam SL, Mujica Troncoso C, Callaghan M, Valvano MA, Berisio R, Mcclean S
* The Burkholderia cenocepacia peptidoglycan-associated lipoprotein is involved in epithelial cell attachment and elicitation of inflammation (293 views)
Cell Microbiol (ISSN: 1462-5814), 2017 May; 19(5): e12691-e12691.
Impact Factor: 4.41
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Maglione M, Montella S, Mollica C, Carnovale V, Iacotucci P, De Gregorio F, Tosco A, Cervasio M, Raia V, Santamaria F
* Lung structure and function similarities between primary ciliary dyskinesia and mild cystic fibrosis: a pilot study (1926 views)
Ital J Pediatr (ISSN: 1720-8424, 1824-7288), 2017 Apr; 43(1): 34-34.
Impact Factor: 1.776
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Dennehy R, Romano M, Ruggiero A, Troncoso CM, Fathy Y, Callaghan M, Valvano M, Berisio R, Mcclean S
* Peptidoglycan-associated lipoprotein is a virulence factor that is involved in host cell attachment of Burkholderia cepacia complex (224 views)
Cellular Microbiology, 2016; inpress: N/D-N/D.
Impact Factor: 4.46
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Pica A, Chi M-C, Chen Y-Y, D'Ischia M, Lin L-L, Merlino A
* The maturation mechanism of γ-glutamyl transpeptidases: Insights from the crystal structure of a precursor mimic of the enzyme from Bacillus licheniformis and from site-directed mutagenesis studies (357 views)
Bba-Gen Subjects (ISSN: 0925-4439, 0006-3002, 1570-9639), 2016; 1864(2): 195-203.
Impact Factor: 5.476
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Ruggiero A, Squeglia F, Romano M, Vitagliano L, De Simone A, Berisio R
* The structure of Resuscitation promoting factor B from M. tuberculosis reveals unexpected ubiquitin-like domains (328 views)
Bba-Gen Subjects (ISSN: 0005-2728, 0006-3002print, 1570-9639print), 2015 Nov 5; 1860(2): 445-451.
Impact Factor: 4.864
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Nikitushkin VD, Demina GR, Shleeva MO, Guryanova SV, Ruggiero A, Berisio R, Kaprelyants AS
* A product of RpfB and RipA joint enzymatic action promotes the resuscitation of dormant mycobacteria (484 views)
Febs J (ISSN: 1742-464x), 2015 Apr 3; 282(13): 2500-2511.
Impact Factor: 4.237
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De Simone G, Di Fiore A, Capasso C, Supuran CT
* The zinc coordination pattern in the eta-carbonic anhydrase from Plasmodium falciparum is different from all other carbonic anhydrase genetic families (472 views)
Bioorg Med Chem Lett (ISSN: 0960-894x), 2015 Apr 1; 25(7): 1385-1389.
Impact Factor: 2.486
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Squeglia F, Ruggiero A, Berisio R
* Exit from mycobacterial dormancy: a structural perspective (396 views)
Curr Med Chem (ISSN: 0929-8673, 1875-533x, 1875-533xelectronic), 2015 Feb 9; 22(14): 1698-1709.
Impact Factor: 3.455
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Berisio R, Squeglia F, Ruggiero A, Petraccone L, Stellato MI, Del Vecchio P
* Differential thermodynamic behaviours of the extra-cellular regions of two Ser/Thr PrkC kinases revealed by calorimetric studies (438 views)
Bba-Gen Subjects (ISSN: 0925-4439, 0006-3002, 1570-9639), 2015 Feb 8; 1854(5): 402-409.
Impact Factor: 5.158
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Berisio R
* Editorial: Molecular determinants of bacterial diseases (354 views)
Curr Med Chem (ISSN: 0929-8673, 1875-533x, 1875-533xelectronic), 2015; 22(14): 1640-1641.
Impact Factor: 3.455
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Ceruso M, Carta F, Osman SM, Alothman Z, Monti SM, Supuran CT
* Inhibition studies of bacterial, fungal and protozoan β-class carbonic anhydrases with Schiff bases incorporating sulfonamide moieties (367 views)
Bioorg Med Chem (ISSN: 0968-0896, 1464-3391, 0968-0896linking), 2015; 23(15): 4181-4187.
Impact Factor: 2.923
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Calce E, Mignogna E, Bugatti V, Galdiero M, Vittoria V, De Luca S
* Pectin functionalized with natural fatty acids as antimicrobial agent (389 views)
Int J Biol Macromol (ISSN: 0141-8130, 0141-8130linking, 1879-0003electronic), 2014 Jul; 68: 28-32.
Impact Factor: 2.858
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Calvanese L, Falcigno L, Maglione C, Marasco D, Ruggiero A, Squeglia F, Berisio R, D'Auria G
* Structural and binding properties of the PASTA domain of PonA2, a key penicillin binding protein from Mycobacterium tuberculosis (468 views)
Biopolymers (ISSN: 0006-3525, 0006-6352, 0006-3525print), 2014 Jul; 101(7): 712-719.
Impact Factor: 2.385
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Del Giudice I, Limauro D, Pedone E, Bartolucci S, Fiorentino G
* A novel arsenate reductase from the bacterium Thermus thermophilus HB27: Its role in arsenic detoxification (420 views)
Bba-Gen Subjects (ISSN: 1570-9639, 0006-3002, 0925-4439), 2013 Oct; 1834(10): 2071-2079.
Impact Factor: 3.191
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Correale S, Ruggiero A, Capparelli R, Pedone E, Berisio R
* Structures of free and inhibited forms of the L, D-transpeptidase LdtMt1 from Mycobacterium tuberculosis (398 views)
Acta Crystallogr D Biol Crystallogr (ISSN: 0907-4449, 0907-4449linking), 2013 Sep; 69(Pt9): 1697-1706.
Impact Factor: 7.232
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Avitabile C, Netti F, Orefice G, Palmieri M, Nocerino N, Malgieri G, D'Andrea LD, Capparelli R, Fattorusso R, Romanelli A
* Design, structural and functional characterization of a Temporin-1b analog active against Gram-negative bacteria (488 views)
Bba-Gen Subjects (ISSN: 0304-4165, 0006-3002, 0925-4439), 2013 Jun; 1830(6): 3767-3775.
Impact Factor: 3.829
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Correale S, Ruggiero A, Pedone E, Berisio R
* Expression, purification, crystallization and preliminary X-ray crystallographic analysis of the l, d-transpeptidase LdtMt1 from Mycobacterium tuberculosis (404 views)
Nucleosides Nucleotides Nucleic Acids (ISSN: 1744-3091, 1744-4309), 2013 Mar 1; 69(3): 253-256.
Impact Factor: 0.568
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Ruggiero A, De Simone P, Smaldone G, Squeglia F, Berisio R
* Bacterial cell division regulation by Ser/Thr kinases: A structural perspective (581 views)
Curr Protein Pept Sci (ISSN: 1389-2037, 1389-2037linking), 2012 Dec; 13(8): 756-766.
Impact Factor: 2.326
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Berisio R
* Learning from pathogens: Exploiting host-pathogen liaison for therapeutic development (523 views)
Curr Protein Pept Sci (ISSN: 1389-2037, 1389-2037linking), 2012 Dec; 13(8): 697-698.
Impact Factor: 2.326
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Simonetti O, Cirioni O, Ghiselli R, Goteri G, Orlando F, Monfregola L, De Luca S, Zizzi A, Silvestri C, Veglia G, Giacometti A, Guerrieri M, Offidani A, Scaloni A
* Antimicrobial properties of distinctin in an experimental model of MRSA-infected wounds (505 views)
Eur J Clin Microbiol Infect Dis (ISSN: 0934-9723), 2012 Nov; 31(11): 3047-3055.
Impact Factor: 3.024
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Berisio R
* Editorial: cell processes in bacterial diseases (409 views)
Protein Pept Lett (ISSN: 0929-8665, 1875-5305), 2012 Oct; 19(10): 1011-1012.
Impact Factor: 1.994
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Berisio R, Ciccarelli L, Squeglia F, De Simone A, Vitagliano L
* Structural and Dynamic properties of incomplete immunoglobulin-like fold domains (477 views)
Protein Pept Lett (ISSN: 0929-8665, 1875-5305), 2012 Oct; 19(10): 1045-1053.
Impact Factor: 1.994
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De Simone G
* Editorial: Zinc Metallo-Enzymes As Target For Drug Design (424 views)
Curr Med Chem (ISSN: 0929-8673, 1875-533x, 1875-533xelectronic), 2012 Feb; 19(6): 820-1012.
Impact Factor: 4.07
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Castellano I, Merlino A
* γ-glutamyltranspeptidases: Sequence, structure, biochemical properties, and biotechnological applications (422 views)
Cell Mol Life Sci (ISSN: 1420-682x), 2012; 69(20): 3381-3394.
Impact Factor: 5.615
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Squeglia F, Marchetti R, Ruggiero A, Lanzetta R, Marasco D, Dworkin J, Petoukhov M, Molinaro A, Berisio R, Silipo A
* Chemical basis of peptidoglycan discrimination by PrkC, a key kinase involved in bacterial resuscitation from dormancy (371 views)
J Am Chem Soc (ISSN: 0002-7863, 0002-2786, 1520-5126), 2011 Dec 28; 133(51): 20676-20679.
Impact Factor: 9.907
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Romanelli A, Moggio L, Montella RC, Campiglia P, Iannaccone M, Capuano F, Pedone C, Capparelli R
* Peptides from Royal Jelly: studies on the antimicrobial activity of jelleins, jelleins analogs and synergy with temporins (1515 views)
J Pept Sci (ISSN: 1099-1387, 1075-2617, 1075-2617print), 2011 Dec 2; 17(5): 348-352.
Impact Factor: 1.799
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Vitagliano L, Berisio R, De Simone A
* Role of hydration in collagen recognition by bacterial adhesins (662 views)
Biophysical Journal (ISSN: 0006-3495, 1542-0086), 2011 May 4; 100(9): 2253-2261.
Impact Factor: 3.653
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Merlino A, Russo Krauss I, Castellano I, De Vendittis E, Rossi B, Conte M, Vergara A, Sica F
* Structure and flexibility in cold-adapted iron superoxide dismutases: The case of the enzyme isolated from Pseudoalteromonas haloplanktis (497 views)
J Struct Biol (ISSN: 1047-8477, 1047-8477linking), 2010 Dec; 172(3): 343-352.
Impact Factor: 3.5
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Ruggiero A, Squeglia F, Izzo V, Silipo A, Vitagliano L, Molinaro A, Berisio R
* Expression, purification, crystallization and preliminary x-ray crystallographic analysis of the peptidoglycan binding region of the ser/thr kinase PrkC from staphylococcus aureus (379 views)
Protein Pept Lett (ISSN: 0929-8665, 1875-5305), 2010 Oct; 17(10): 1296-1299.
Impact Factor: 1.849
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Ruggiero A, Marasco D, Squeglia F, Soldini S, Pedone E, Pedone C, Berisio R
* Structure and functional regulation of RipA, a mycobacterial enzyme essential for daughter cell separation (419 views)
Structure (ISSN: 0969-2126, 1878-4186, 0969-2126linking), 2010 Sep 8; 18(9): 1184-1190.
Impact Factor: 6.337
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Capparelli R, Romanelli A, Iannaccone M, Nocerino N, Ripa R, Pensato S, Pedone C, Iannelli D
* Synergistic antibacterial and anti-inflammatory activity of temporin A and modified temporin B in vivo (452 views)
Plosone (ISSN: 1932-6203, 1932-6203electronic, 1932-6203linking), 2009 Sep 28; 4(9): e7191-e7191.
Impact Factor: 4.351
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Ruggiero A, Tizzano B, Pedone E, Pedone C, Wilmanns M, Berisio R
* Crystal Structure of the Resuscitation-Promoting Factor (Delta DUF)RpfB from M. tuberculosis (571 views)
J Mol Biol (ISSN: 0022-2836, 1089-8638, 1089-8638electronic), 2009 Jan 9; 385(1): 153-162.
Impact Factor: 3.871
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Limauro D, Saviano M, Galdi I, Rossi M, Bartolucci S, Pedone E
* Sulfolobus solfataricus protein disulphide oxidoreductase: insight into the roles of its redox sites (234 views)
Protein Engineering Design & Selection (ISSN: 1741-0126), 2009 Jan; 22(1): 19-26.
Impact Factor: 2.596
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Cirioni O, Ghiselli R, Orlando F, Silvestri C, De Luca S, Salzano AM, Mocchegiani F, Saba V, Scalise G, Scaloni A, Giacometti A
* Efficacy of the amphibian peptide distinctin in a neutropenic mouse model of staphylococcal sepsis (315 views)
Critical Care Medicine (ISSN: 0090-3493), 2008 Sep; 36(9): 2629-2633.
Impact Factor: 6.594
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Prato S, Vitale RM, Contursi P, Lipps G, Saviano M, Rossi M, Bartolucci S
* Molecular modeling and functional characterization of the monomeric primase-polymerase domain from the Sulfolobus solfataricus plasmid pIT3 (398 views)
Febs J (ISSN: 1742-464x), 2008; 275(17): 4389-4402.
Impact Factor: 3.139
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Galdiero S, Galdiero M, Pedone C
* Beta-Barrel Membrane Bacterial Proteins: Structure, Function, Assembly And Interaction With Lipids (438 views)
Curr Protein Pept Sci (ISSN: 1389-2037, 1389-2037linking), 2007 Feb; 8(1): 63-82.
Impact Factor: 3.259
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Pedone E, Saviano M, Bartolucci S, Rossi M, Ausili A, Scire A, Bertoli E, Tanfani F
* Temperature-, SDS-, and pH-induced conformational changes in protein disulfide oxidoreductase from the archaeon Pyrococcus furiosus: A dynamic simulation and fourier transform infrared spectroscopic study (318 views)
J Proteome Res (ISSN: 1535-3893), 2005 Nov; 4(6): 1972-1980.
Impact Factor: 6.901
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Galdiero S, Gouaux E
* High Resolution Crystallographic Studies Of Alpha-Hemolysin-Phospholipid Complexes Define Heptamer-Lipid Head Group Interactions: Implication For Understanding Protein-Lipid Interactions (320 views)
Protein Sci (ISSN: 0961-8368, 1469-896xelectronic), 2004 Jun; 13(6): 1503-1511.
Impact Factor: 4.116
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Esposito L, Bruno I, Sica F, Raia CA, Giordano A, Rossi M, Mazzarella L, Zagari A
* Crystal structure of a ternary complex of the alcohol dehydrogenase from Sulfolobus solfataricus (529 views)
Biochemistry (ISSN: 0006-2960, 1520-4995, 1520-4995electronic), 2003 Dec 16; 42(49): 14397-14407.
Impact Factor: 3.922
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Esposito L, Sica F, Raia CA, Giordano A, Rossi M, Mazzarella L, Zagari A
* Crystal Structure Of The Alcohol Dehydrogenase From The Hyperthermophilic Archaeon Sulfolobus Solfataricus At 1. 85 Angstrom Resolution (435 views)
J Mol Biol (ISSN: 0022-2836, 1089-8638, 1089-8638electronic), 2002 Apr 26; 318(2): 463-477.
Impact Factor: 5.359
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46 Records (44 excluding Abstracts).
Total impact factor: 183.242 (177.115 excluding Abstracts).
Total 5 year impact factor: 184.435 (178.089 excluding Abstracts).
Total impact factor: 183.242 (177.115 excluding Abstracts).
Total 5 year impact factor: 184.435 (178.089 excluding Abstracts).
510 views. Last view on Wednesday 22 March 2023, 14:54:25
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